Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,458,803 – 2,458,900 |
Length | 97 |
Max. P | 0.928907 |
Location | 2,458,803 – 2,458,900 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 70.84 |
Mean single sequence MFE | -24.66 |
Consensus MFE | -17.08 |
Energy contribution | -17.22 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.25 |
Mean z-score | -1.35 |
Structure conservation index | 0.69 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928907 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2458803 97 - 22224390 ACAUCAAUAAGGGUCUUCUGGCCCUGGGCAACGUGAUCAAUGCCCUGGGAUGUGAGUAUCUAUCAUUUAG-----CCACUGGCUUGAAAAUUGAUCU-CCAUU (((((....((((((....))))))(((((..........)))))...)))))(((.(((........((-----((...))))........)))))-).... ( -29.99) >DroSec_CAF1 2873 85 - 1 ACAUCAAUAAGGGUCUUCUGGCCCUGGGCAACGUGAUCAAUGCCUUGGGAUGUGAGUAUCUAUCAUUUAG-----CCACUGG------------UCU-CCAUU .........((((((....))))))(((((..........)))))..(((..(.(((..(((.....)))-----..))).)------------..)-))... ( -22.20) >DroSim_CAF1 3700 84 - 1 ACAUCAAUAAGGGUCUUCUGGCCCUGGGCAACGUGAUCAAUGCCUUGGGAUGUGAGUAUCUAUCAUUUAG-----CCACUGG------------UCU-CC-UU .........((((((....))))))(((((..........))))).((((..(.(((..(((.....)))-----..))).)------------..)-))-). ( -22.40) >DroEre_CAF1 18346 85 - 1 ACAUCAAUAAGGGCCUUCUUGCCCUGGGCAGCGUGAUUAAUGCCCUGGGAUGUGAGUAUUUGCCAUUUAG-----CCACUUG------------AUU-GUAAA ....((((((((((.......(((.(((((..........))))).)))..(((.((....)))))...)-----)).))).------------)))-).... ( -22.30) >DroYak_CAF1 16749 90 - 1 ACAUCAAUAAGGGCCUUCUUGCCCUGGGCAACGUGAUUAAUGCCUUGGGAUGUGAGUAUUUGCCACAUCUCUCUGUAGCAUU------------GUU-AAAAG ..((((...(((((......))))).(....).))))((((((...((((((((.((....))))))))))......)))))------------)..-..... ( -26.40) >DroAna_CAF1 17665 95 - 1 ACAUUAACAAGGGCCUCCUGGCACUUGGCAAUGUCAUCAACGCUCUGGGAUGUGAGUU---AGCUUUCCA-----GGAUUAGAUUACAGAUUUUUGUAACACU (((((..((((.(((....))).))))..))))).........(((((((.((.....---.)).)))))-----))......((((((....)))))).... ( -24.70) >consensus ACAUCAAUAAGGGCCUUCUGGCCCUGGGCAACGUGAUCAAUGCCCUGGGAUGUGAGUAUCUAUCAUUUAG_____CCACUGG____________UCU_CCAUU (((((....((((((....))))))(((((..........)))))...))))).................................................. (-17.08 = -17.22 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:07 2006