Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,458,659 – 2,458,779 |
Length | 120 |
Max. P | 0.594775 |
Location | 2,458,659 – 2,458,779 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -42.44 |
Consensus MFE | -27.11 |
Energy contribution | -26.70 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.33 |
Mean z-score | -1.86 |
Structure conservation index | 0.64 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2458659 120 - 22224390 GCUGGCCAGGCCGCUGGCUACAUACCCUAUCGCCAGUCCAAGCUGACGCGUCUGCUGCAGGACUCCCUGGGCGGUAAUUCCAUUACGCUGAUGAUUGCUUGCGUCAGUCCCGCCGACUAC ..((((..((..((((((.............))))))))..(((((((((.(((((.((((....)))))))))............((........)).)))))))))...))))..... ( -41.12) >DroPse_CAF1 5955 120 - 1 GCCGGACAAGUUUCUGCUUAUAUACCAUACCGCCAGUCGAAGCUGACGCACCUGCUCAAGGACUCGCUGGGCGGCAACUCCAUCACAUUGAUGAUUGCCUGCGUCAGUCCGGCUGACUAC (((((((.((((((.(((................))).))))))((((((...(((((.(......))))))(((((...((((.....)))).))))))))))).)))))))....... ( -45.49) >DroEre_CAF1 18202 120 - 1 GCUCACCAAUCCACUGCCUAUAUACCCUACCGGCAGUCCAAGCUGACGCGUCUGCUGCAGGACUCCCUAGGCGGUAACUCCAUUACGUUGAUGAUUGCUUGCGUCAGCCCCGCUGACUAC ((....(((((.((((((((...........((.(((((.(((.((....)).)))...))))).))))))))))(((........)))...)))))...))((((((...))))))... ( -37.20) >DroYak_CAF1 16610 120 - 1 GCUGGACAAACCGCCGGCUACAUACCCUAUCGGCAGUCCAAGCUGACGCGUCUGCUGCAGGACUCCCUAGGCGGUAACUCCAUUACGUUGAUGAUUGCCUGCGUCAGUCCCGCUGACUAU ((.((.(((((((((((........))....((.(((((.(((.((....)).)))...))))).))..)))))).....((((.....)))).))))).))(((((.....)))))... ( -41.40) >DroAna_CAF1 17528 120 - 1 GCUGGCCAGGUUGCUGGCUUCGUCCGCUACCGAGAUUCAAAACUUACCCGCCUCCUUCAGGACUCGCUGGGCGGCAACUCCAUCACCUUGAUGAUAGCCUGCGUCAGUCCGGCCGACUAC ..(((((.(((.((.(((...))).)).)))............................((((((((.(((((....)..((((.....))))...)))))))..))))))))))..... ( -38.90) >DroPer_CAF1 21088 120 - 1 GCCGGACAAGUUUCUGGUUAUAUACCAUACCGCCAGUCGAAGCUGACGCGCCUGCUCCAGGACUCGCUGGGCGGCAAUUCCAUCACAUUGAUGAUUGCCUGCGUCAGUCCGGCUGACUAC (((((((.((((((((((..(((...)))..))))...))))))(((((....((.((((......))))))((((((..((((.....)))))))))).))))).)))))))....... ( -50.50) >consensus GCUGGACAAGCCGCUGGCUACAUACCCUACCGCCAGUCCAAGCUGACGCGCCUGCUGCAGGACUCCCUGGGCGGCAACUCCAUCACGUUGAUGAUUGCCUGCGUCAGUCCCGCUGACUAC ((((((......))))))................((((...((((((((((((.....((......))))))(((((...((((.....)))).))))).))))))))......)))).. (-27.11 = -26.70 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:06 2006