Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,453,331 – 2,453,438 |
Length | 107 |
Max. P | 0.500000 |
Location | 2,453,331 – 2,453,438 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.27 |
Mean single sequence MFE | -30.53 |
Consensus MFE | -19.44 |
Energy contribution | -22.33 |
Covariance contribution | 2.89 |
Combinations/Pair | 1.08 |
Mean z-score | -2.68 |
Structure conservation index | 0.64 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2453331 107 + 22224390 AUGUAUGAGAAAUCGCAGGCAUUUCCAAG-------------GCAUUUGUUGUAUGUCAUAGGAAUGAAAUCAUACUUGCACAAGAUUUCAAUCAUAUUAUGCCCACAAAUCGAGCUACA .((((.((....))...(((((((((..(-------------((((.......)))))...))))(((((((............)))))))........)))))............)))) ( -20.60) >DroSec_CAF1 13780 118 + 1 ACGAAUGAGAAAUCGCAGGCAUUUCCAAGGGGCAUUCUUAUGGCAUUUGUUG--UGCCAUAGGAAUGAAAUCACACUUGCACAAGGUUUCAAUCAUAUUAUGCCCACAAAUCGAACUACA .(((.((.(((((.(....))))))))..(((((((((((((((((.....)--)))))))))))(((((((............))))))).........))))).....)))....... ( -35.50) >DroSim_CAF1 16237 118 + 1 ACGAAUGAGAAAUCGCAGGCAUUUCCAAGGGGCAUUCUUAUGGCAUUUGUUG--UGCCAUAGGAAUGAAAUCACACUUGCACAAGGUUUCAAUCAUAUUAUGCCCACAAAUCGAACUACA .(((.((.(((((.(....))))))))..(((((((((((((((((.....)--)))))))))))(((((((............))))))).........))))).....)))....... ( -35.50) >consensus ACGAAUGAGAAAUCGCAGGCAUUUCCAAGGGGCAUUCUUAUGGCAUUUGUUG__UGCCAUAGGAAUGAAAUCACACUUGCACAAGGUUUCAAUCAUAUUAUGCCCACAAAUCGAACUACA ....((((((((((....(((...........(((((((((((((.........)))))))))))))..........)))....))))))..))))........................ (-19.44 = -22.33 + 2.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:59 2006