Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,452,971 – 2,453,251 |
Length | 280 |
Max. P | 0.964553 |
Location | 2,452,971 – 2,453,091 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -42.77 |
Consensus MFE | -42.23 |
Energy contribution | -42.23 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.99 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2452971 120 - 22224390 CAUCGGAGACCCGAAAGCUGUCCGCCAAUGUGGUCAGCCAAUUGACCACGUUCUCGUUGGCAUAGGUGAUCAGGCCCUGGCCGAACGGGUGCUUGCCAUCCAGCACAAAGUUAAUGAUAC ..((((....))))..((((...((((((((((((((....))))))))(....)))))))...((((..(((((((((......)))).))))).))))))))................ ( -43.70) >DroSec_CAF1 13428 120 - 1 CAUCGGAGACCCGAAAGCUGUCCGCCAAGGUGGUCAGCCAAUUGACCACGUUCUCGUUGGCAUAGGUGAUCAGGCCCUGGCCAAACGGGUGCUUGCCAUCCAGCACAAAGUUAAUGAUUC ..((((....))))..((((...(((((.((((((((....))))))))(....).)))))...((((..(((((((((......)))).))))).))))))))................ ( -42.30) >DroSim_CAF1 15885 120 - 1 CAUCGGAGACCCGAAAGCUGUCCGCCAAGGUGGUCAGCCAAUUGACCACGUUCUCGUUGGCAUAGGUGAUCAGGCCCUGGCCAAACGGGUGCUUGCCAUCCAGCACAAAGUUAAUGAUUC ..((((....))))..((((...(((((.((((((((....))))))))(....).)))))...((((..(((((((((......)))).))))).))))))))................ ( -42.30) >consensus CAUCGGAGACCCGAAAGCUGUCCGCCAAGGUGGUCAGCCAAUUGACCACGUUCUCGUUGGCAUAGGUGAUCAGGCCCUGGCCAAACGGGUGCUUGCCAUCCAGCACAAAGUUAAUGAUUC ..((((....))))..((((...(((((.((((((((....))))))))(....).)))))...((((..(((((((((......)))).))))).))))))))................ (-42.23 = -42.23 + -0.00)
Location | 2,453,051 – 2,453,171 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -50.13 |
Consensus MFE | -47.16 |
Energy contribution | -46.50 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.07 |
Mean z-score | -2.34 |
Structure conservation index | 0.94 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2453051 120 + 22224390 UGGCUGACCACAUUGGCGGACAGCUUUCGGGUCUCCGAUGAUAUGGGCAAGCUGCGUCUGCAGUUCAAGCUCUUUCACAAGCCGCUCUUCAGCUGGAAGGGCAGUUAUGUGGUCACCCAG (((.(((((((((.(((.........((((....))))(((...((((.((((((....))))))...))))..)))...)))(((((((.....)))))))....))))))))).))). ( -50.20) >DroSec_CAF1 13508 120 + 1 UGGCUGACCACCUUGGCGGACAGCUUUCGGGUCUCCGAUGAUAUGGGCAAGCUGCGCCUGCAGUUCAAGCUCUUCCACAAGCCGCUCUUCAGCUGGAAGGGCAGCUAUGUGGUCACCCAG (((.(((((((..((((((((.((..((((....))))......((((.......)))))).))))..(((((((((......(((....)))))))))))).)))).))))))).))). ( -50.10) >DroSim_CAF1 15965 120 + 1 UGGCUGACCACCUUGGCGGACAGCUUUCGGGUCUCCGAUGAUAUGGGCAAGCUGCGCCUGCAGUUCAAGCUCUUCCACAAGCCGCUCUUCAGCUGGAAGGGCAGCUAUGUGGUCACCCAG (((.(((((((..((((((((.((..((((....))))......((((.......)))))).))))..(((((((((......(((....)))))))))))).)))).))))))).))). ( -50.10) >consensus UGGCUGACCACCUUGGCGGACAGCUUUCGGGUCUCCGAUGAUAUGGGCAAGCUGCGCCUGCAGUUCAAGCUCUUCCACAAGCCGCUCUUCAGCUGGAAGGGCAGCUAUGUGGUCACCCAG (((.(((((((..((((((((.((..((((....))))......((((.......)))))).))))..(((((((((......(((....)))))))))))).)))).))))))).))). (-47.16 = -46.50 + -0.66)
Location | 2,453,051 – 2,453,171 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -50.50 |
Consensus MFE | -47.20 |
Energy contribution | -47.87 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.86 |
Structure conservation index | 0.93 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2453051 120 - 22224390 CUGGGUGACCACAUAACUGCCCUUCCAGCUGAAGAGCGGCUUGUGAAAGAGCUUGAACUGCAGACGCAGCUUGCCCAUAUCAUCGGAGACCCGAAAGCUGUCCGCCAAUGUGGUCAGCCA ..((.(((((((((..((((..(((..(((....)))(((((......))))).)))..))))..(((((((..........((((....)))))))))))......))))))))).)). ( -44.10) >DroSec_CAF1 13508 120 - 1 CUGGGUGACCACAUAGCUGCCCUUCCAGCUGAAGAGCGGCUUGUGGAAGAGCUUGAACUGCAGGCGCAGCUUGCCCAUAUCAUCGGAGACCCGAAAGCUGUCCGCCAAGGUGGUCAGCCA .((((..((((((.((((((.((((.....)))).)))))))))))..(.(((((.....))))).)...)..)))).....((((....))))..((((.((((....)))).)))).. ( -53.70) >DroSim_CAF1 15965 120 - 1 CUGGGUGACCACAUAGCUGCCCUUCCAGCUGAAGAGCGGCUUGUGGAAGAGCUUGAACUGCAGGCGCAGCUUGCCCAUAUCAUCGGAGACCCGAAAGCUGUCCGCCAAGGUGGUCAGCCA .((((..((((((.((((((.((((.....)))).)))))))))))..(.(((((.....))))).)...)..)))).....((((....))))..((((.((((....)))).)))).. ( -53.70) >consensus CUGGGUGACCACAUAGCUGCCCUUCCAGCUGAAGAGCGGCUUGUGGAAGAGCUUGAACUGCAGGCGCAGCUUGCCCAUAUCAUCGGAGACCCGAAAGCUGUCCGCCAAGGUGGUCAGCCA .((((..((((((.((((((.((((.....)))).)))))))))))...........((((....)))).)..)))).....((((....))))..((((.((((....)))).)))).. (-47.20 = -47.87 + 0.67)
Location | 2,453,091 – 2,453,211 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.61 |
Mean single sequence MFE | -37.37 |
Consensus MFE | -36.41 |
Energy contribution | -35.97 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.29 |
Structure conservation index | 0.97 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2453091 120 + 22224390 AUAUGGGCAAGCUGCGUCUGCAGUUCAAGCUCUUUCACAAGCCGCUCUUCAGCUGGAAGGGCAGUUAUGUGGUCACCCAGGUGAGUAAUUUCCAAUUUCCUCCAUUUCGUUCGCUCGAUU ...(((((.((((((....))))))..(((....((((((((.(((((((.....))))))).))).)))))((((....))))........................))).)))))... ( -33.10) >DroSec_CAF1 13548 112 + 1 AUAUGGGCAAGCUGCGCCUGCAGUUCAAGCUCUUCCACAAGCCGCUCUUCAGCUGGAAGGGCAGCUAUGUGGUCACCCAGGUGAGUAAUU-------CCCUCCGUUUCGUU-GCUCGAUU ...((((((((((((....)))))..((((....((((((((.(((((((.....))))))).))).)))))((((....))))......-------......))))..))-)))))... ( -39.50) >DroSim_CAF1 16005 112 + 1 AUAUGGGCAAGCUGCGCCUGCAGUUCAAGCUCUUCCACAAGCCGCUCUUCAGCUGGAAGGGCAGCUAUGUGGUCACCCAGGUGAGUAAUU-------CCCUCCGUUUCGUU-GCUCGAUU ...((((((((((((....)))))..((((....((((((((.(((((((.....))))))).))).)))))((((....))))......-------......))))..))-)))))... ( -39.50) >consensus AUAUGGGCAAGCUGCGCCUGCAGUUCAAGCUCUUCCACAAGCCGCUCUUCAGCUGGAAGGGCAGCUAUGUGGUCACCCAGGUGAGUAAUU_______CCCUCCGUUUCGUU_GCUCGAUU ....((((.((((((....))))))...))))..((((((((.(((((((.....))))))).))).)))))((((....))))......................(((......))).. (-36.41 = -35.97 + -0.44)
Location | 2,453,131 – 2,453,251 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.34 |
Mean single sequence MFE | -42.37 |
Consensus MFE | -36.56 |
Energy contribution | -35.90 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.09 |
Mean z-score | -1.66 |
Structure conservation index | 0.86 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2453131 120 + 22224390 GCCGCUCUUCAGCUGGAAGGGCAGUUAUGUGGUCACCCAGGUGAGUAAUUUCCAAUUUCCUCCAUUUCGUUCGCUCGAUUUGUCGUCGAAUGAGUGGGCCUUUGGGGAAUUCCGCAAACA ...(((((((.....))))))).(((.(((((((((....))))....(..((((.....((((((.((((((..(((....))).))))))))))))...))))..)...)))))))). ( -43.10) >DroSec_CAF1 13588 112 + 1 GCCGCUCUUCAGCUGGAAGGGCAGCUAUGUGGUCACCCAGGUGAGUAAUU-------CCCUCCGUUUCGUU-GCUCGAUUUGUGGGCGAAUGAGUGGGCCUUUGGGGAAUUCCACUCACU ((.(((((((.....))))))).))....(((....)))(((((((((((-------((((((..((((((-(((((.....))))).))))))..)).....))))))))..))))))) ( -42.00) >DroSim_CAF1 16045 112 + 1 GCCGCUCUUCAGCUGGAAGGGCAGCUAUGUGGUCACCCAGGUGAGUAAUU-------CCCUCCGUUUCGUU-GCUCGAUUUGUGGGCGAAUGAGUGGGCCUUUGGGGAAUUCCACUCACU ((.(((((((.....))))))).))....(((....)))(((((((((((-------((((((..((((((-(((((.....))))).))))))..)).....))))))))..))))))) ( -42.00) >consensus GCCGCUCUUCAGCUGGAAGGGCAGCUAUGUGGUCACCCAGGUGAGUAAUU_______CCCUCCGUUUCGUU_GCUCGAUUUGUGGGCGAAUGAGUGGGCCUUUGGGGAAUUCCACUCACU ((.(((((((.....))))))).))...((((((((....))))...............(((((....(((.((((.(((((....))))))))).)))...)))))....))))..... (-36.56 = -35.90 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:58 2006