Locus 8700

Sequence ID X_DroMel_CAF1
Location 22,194,609 – 22,194,714
Length 105
Max. P 0.837805
window14298 window14299

overview

Window 8

Location 22,194,609 – 22,194,714
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 88.25
Mean single sequence MFE -43.21
Consensus MFE -32.69
Energy contribution -33.80
Covariance contribution 1.11
Combinations/Pair 1.03
Mean z-score -2.76
Structure conservation index 0.76
SVM decision value 0.74
SVM RNA-class probability 0.837805
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22194609 105 + 22224390
GGUGUUGCAGGCAGUGGAACUGCCGCCUGAAUAUUAGGCACCGCUGUCGGCACUGCAAAGGGAUUAUCUAGCCGCACUCCCCCUGCCACACCACUAAUUAAGUCC
(((((.((((((((((........((((((...)))))).(((....)))))))))...((((..............)))).)))).)))))............. ( -37.34)
>DroEre_CAF1 47422 105 + 1
GGUGUGGCAGGCAGUGGAGAUGCCGCCUGUAUAUUCGGCACUGCCGUCGGAACUGCGAAAGGAUUAUCUAGCGGCACACCGCCUGCCACUCCCCCAAUUAGGUCC
((.(((((((((.(((.((.(((((..........)))))))(((((..((..(.(....).)...))..))))).))).))))))))).)).((.....))... ( -47.50)
>DroYak_CAF1 37819 105 + 1
GGUGUGGCAGGCAGUGGAGCUGCCGCCUGUAUAUUCGGCACCGCUGUCGGAACUGCAAAGGGAUUAUCUAGCGGCACCCCGCCUGCCACUCCCCCAAUUAAAUCC
((.(((((((((.(.((.(.((((((.((((..(((((((....)))))))..)))).(((.....))).))))))))))))))))))).))............. ( -44.80)
>consensus
GGUGUGGCAGGCAGUGGAGCUGCCGCCUGUAUAUUCGGCACCGCUGUCGGAACUGCAAAGGGAUUAUCUAGCGGCACACCGCCUGCCACUCCCCCAAUUAAGUCC
((.(((((((((...((...((((((..(...((((.((((((....)))...)))....))))...)..))))))..))))))))))).))............. (-32.69 = -33.80 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 22,194,609 – 22,194,714
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 88.25
Mean single sequence MFE -43.68
Consensus MFE -33.03
Energy contribution -34.70
Covariance contribution 1.67
Combinations/Pair 1.06
Mean z-score -2.06
Structure conservation index 0.76
SVM decision value 0.06
SVM RNA-class probability 0.562171
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22194609 105 - 22224390
GGACUUAAUUAGUGGUGUGGCAGGGGGAGUGCGGCUAGAUAAUCCCUUUGCAGUGCCGACAGCGGUGCCUAAUAUUCAGGCGGCAGUUCCACUGCCUGCAACACC
...........(((.((((((((.((((.(((.(((.((..........(((.(((.....))).))).......)).))).))).)))).))))).))).))). ( -38.63)
>DroEre_CAF1 47422 105 - 1
GGACCUAAUUGGGGGAGUGGCAGGCGGUGUGCCGCUAGAUAAUCCUUUCGCAGUUCCGACGGCAGUGCCGAAUAUACAGGCGGCAUCUCCACUGCCUGCCACACC
...(((....)))((.((((((((((((((((((((.((((......(((......)))((((...))))..))).).)))))))....))))))))))))).)) ( -48.50)
>DroYak_CAF1 37819 105 - 1
GGAUUUAAUUGGGGGAGUGGCAGGCGGGGUGCCGCUAGAUAAUCCCUUUGCAGUUCCGACAGCGGUGCCGAAUAUACAGGCGGCAGCUCCACUGCCUGCCACACC
.............((.((((((((((((((((((((.((((.((.....(((...(((....)))))).)).))).).)))))))...)).))))))))))).)) ( -43.90)
>consensus
GGACUUAAUUGGGGGAGUGGCAGGCGGAGUGCCGCUAGAUAAUCCCUUUGCAGUUCCGACAGCGGUGCCGAAUAUACAGGCGGCAGCUCCACUGCCUGCCACACC
.............((.((((((((((((((((((((.((((.((...((((.((....)).))))....)).))).).))))))).))))...))))))))).)) (-33.03 = -34.70 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:36 2006