| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,448,778 – 2,448,898 |
| Length | 120 |
| Max. P | 0.517202 |
| Location | 2,448,778 – 2,448,898 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.85 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -20.77 |
| Energy contribution | -20.67 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.56 |
| Structure conservation index | 0.89 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2448778 120 - 22224390 UCUCGACUGGCCGACUGGCCUAGAAGCCAAUUAAAGUAGUGCCUUAACUACGCCCGGUCAACCUUGCAUUAUCCAACUACCUUAUGUAAUAACAUCGUACGUAUAUGUAUAUAGCCCGCA ....((((((.(...((((......))))......(((((......)))))).)))))).....(((................((((....)))).(((((....))))).......))) ( -25.10) >DroSec_CAF1 9428 97 - 1 UCUCGAACGGCCGACUGGCCUAGAAGCCAAUUAAAGUAGUGCCUUAACUUCGCCCGGCCAACC------------------UUAU---AUAACAACGUGCGA--AUGUAUAUAGCUCACA ....((.((((((..((((......))))......(.(((......))).)...)))))....------------------.(((---((....((((....--)))))))))).))... ( -19.20) >DroSim_CAF1 11773 115 - 1 UCUCGAACGGCCGACUGGCCUAGAAGCCAAUUAAAGUAGUGCCCUAACUACGCGCGGCCAACCUUGCAUUAUCCAACUACCUUAU---AUAACAUCGUGCGA--AUGUAUAUAGCUCACA ....((.((((((..((((......))))......(((((......)))))...))))).......................(((---(((.((((....).--)))))))))).))... ( -25.40) >consensus UCUCGAACGGCCGACUGGCCUAGAAGCCAAUUAAAGUAGUGCCUUAACUACGCCCGGCCAACCUUGCAUUAUCCAACUACCUUAU___AUAACAUCGUGCGA__AUGUAUAUAGCUCACA ........(((((..((((......))))......(((((......)))))...))))).....................................(((((....))))).......... (-20.77 = -20.67 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:51 2006