Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 344,002 – 344,121 |
Length | 119 |
Max. P | 0.798930 |
Location | 344,002 – 344,121 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.98 |
Mean single sequence MFE | -46.67 |
Consensus MFE | -18.02 |
Energy contribution | -17.83 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.48 |
Mean z-score | -2.09 |
Structure conservation index | 0.39 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 344002 119 + 22224390 UUCGUUGU-CUGAGUAACCCAGCCAGGCUGCGCCCUCAGCCUCAGGAAAUCCUUGAGUUGUUGGAAGGGUAAAUCCUUGCACCCACCCAAUGAUUUCGCCAGCCAGUCGGCGAUGACCUC .(((((((-(((.((......))))(((((.((.......((((((.....))))))(..((((..((((..........))))..))))..)....)))))))....)))))))).... ( -37.50) >DroPse_CAF1 2290 117 + 1 UUUGCAGUCCUGGCUGACCAUGCCCGGCUGCGAACGCAGCUGGAACAGUCGCAUCAGUUGUGCCACCGGCAGCUCGUUG---CCGCGCAGGGAUGUGGCCAGCCAUUCUAUGAACACUUC (((..((...((((((.......((((((((....))))))))....((((((((..((((((....(((((....)))---)))))))).))))))))))))))..))..)))...... ( -50.80) >DroSim_CAF1 8582 119 + 1 UUCGUCGU-CUGAGUAACCCAGCCAGGCUGCGCCCUCAGGCUCAGGAAAUCCUUGAGUUGCUGGAAGGGUACAUCCUUGCACCCACCCAAUGAUUUCGCCAGCCAGCCGGCGAUGAUCUC .(((((((-(((.((......))))(((((.((((...((((((((.....))))))))...))..((((.((....)).)))).............)))))))....)))))))).... ( -42.20) >DroEre_CAF1 11275 119 + 1 UUCGUCGU-CUGAGUAACCCAGCCAGGCUGCGCCCUCAGGCUUAGGAAAUCCUUCAGUUGCUGGGUGGGUAAGUCCUCGCACCCACCCAACGAUGUCGACAGCCAGUCGGCGAUGACCUC .(((((((-(((((...(.((((...)))).)..)))))))..(((....)))...((((.(((((((((..(....)..))))))))).))))((((((.....))))))))))).... ( -48.20) >DroYak_CAF1 8730 119 + 1 UUCGUCGU-CUGAGUAACCCAGCCAGGCUGCGCCCUCAGGCUCAGGAAAUCCUUCAGCUGCUGGGUGGGCAAGUCUUUGCAGCCACCCAAUGACUGCGACAGCCAGUCGGCGACGACCUC .(((((((-(((.((......))))((((((((..(((((((.(((....)))..))))..(((((((((((....))))..))))))).)))..))).)))))....)))))))).... ( -50.50) >DroPer_CAF1 2271 117 + 1 UUUGCAGUCCUGGCUGACCAUGCCCGGCUGCGCACGCAGCUGGAACAGUCGCAUCAGUUGUGCCACCGGCAGCUCGUUG---CCGCGCAGGGAUGUGGCCAGCCAUUCUAUGAACACUUC (((..((...((((((.......((((((((....))))))))....((((((((..((((((....(((((....)))---)))))))).))))))))))))))..))..)))...... ( -50.80) >consensus UUCGUCGU_CUGAGUAACCCAGCCAGGCUGCGCCCUCAGCCUCAGGAAAUCCUUCAGUUGCUGGAAGGGCAAAUCCUUGCACCCACCCAAUGAUGUCGCCAGCCAGUCGGCGAUGACCUC .((((((..(((.......)))...(((((((((((....(((((.((.........)).))))))))))..(((.(((........))).)))...).)))))...))))))....... (-18.02 = -17.83 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:51 2006