Locus 8699

Sequence ID X_DroMel_CAF1
Location 22,194,399 – 22,194,498
Length 99
Max. P 0.609929
window14297

overview

Window 7

Location 22,194,399 – 22,194,498
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 92.59
Mean single sequence MFE -33.60
Consensus MFE -32.21
Energy contribution -31.33
Covariance contribution -0.88
Combinations/Pair 1.22
Mean z-score -1.45
Structure conservation index 0.96
SVM decision value 0.15
SVM RNA-class probability 0.609929
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22194399 99 - 22224390
ACCGCCAGCUGCUCCAGAAGCGGAUGACCUUUUGGAUAUGUUUGGUACUACGGCAUGUAAGCCGGCCAAGCCGCCACCACCUAAAUCCAAGGAGGACAU
.((((...(((...)))..))))(((.((((((((((.((..((((.....(((......)))(((......)))))))..)).)))))).)))).))) ( -33.20)
>DroEre_CAF1 47212 99 - 1
ACCGCCAGCCGCUCCAGAGGCCGACGACCUUUUGGAUAUGUUUGGUACUACGGCCAGCAAGCCGGCCAAGCCGCCACCACCCAAGUCCAAGGAGGACAU
..((.(.(((........))).).)).((((((((((.((..((((.....(((......)))(((......)))))))..)).)))))).)))).... ( -33.30)
>DroYak_CAF1 37609 99 - 1
ACCGCCAGCCGCUCCAGAAGCGGAUGACCUUUUGGAUAUGUUUGGUACUACGGCAAGUAAGCCGGUCAAGCCGCCGCCACCCAAGUCCAAGGAGGACAU
.....((.(((((.....))))).)).((((((((((.((..((((.....(((......)))(((......)))))))..)).)))))).)))).... ( -34.30)
>consensus
ACCGCCAGCCGCUCCAGAAGCGGAUGACCUUUUGGAUAUGUUUGGUACUACGGCAAGUAAGCCGGCCAAGCCGCCACCACCCAAGUCCAAGGAGGACAU
.((.((..(((((.....)))))........((((((.((..((((.....(((......)))(((......)))))))..)).)))))))).)).... (-32.21 = -31.33 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:34 2006