Locus 8698

Sequence ID X_DroMel_CAF1
Location 22,185,123 – 22,185,237
Length 114
Max. P 0.859411
window14296

overview

Window 6

Location 22,185,123 – 22,185,237
Length 114
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 85.19
Mean single sequence MFE -35.77
Consensus MFE -25.67
Energy contribution -26.17
Covariance contribution 0.50
Combinations/Pair 1.22
Mean z-score -2.07
Structure conservation index 0.72
SVM decision value 0.82
SVM RNA-class probability 0.859411
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22185123 114 - 22224390
AUCGCUGGCUCCAGUUUUCCACUUCACAUGAUGUUAACAUUAGCAUUAACGUGUAAGUUUAUGGCGAAGGCUGCAAG-----CAUAUAUUAAUCAACACUGGAGUGAGCUGCCAGCCUC
...((((((...((((...(((((((..((((((((....))))))))..(((((.((((..(((....)))..)))-----).)))))..........)))))))))))))))))... ( -35.90)
>DroSec_CAF1 29054 113 - 1
AUCGCUAGCUCCAGUUUUCCACUGUGCAUGAUGUUAACAUUAGCAUUACCGUGUAAGUUUCUGGCGAAAGCUGCAAG-----CAUAGAUUAAUCAACA-UGGAGUGAGCUGCCAGCCUU
...(((.(((((((((.....((((((.((((((((....))))))))..............(((....)))....)-----))))).......))).-)))))).))).......... ( -32.40)
>DroEre_CAF1 40773 119 - 1
AUCGCUAGCUCCAGUUUCCAUCUUCGCGUGGUGUUAGCGUUAGCAUUAACGUUUAAGUUUCUGGCGCAACCUGCCGGCUUCGCAUAGAGUAAUCAACACUGGGGUGAGCUGCCAGCCUU
...(((.((((((((..........((((((((((.(((((((....(((......))).))))))))))..))))....)))...((....))...)))))))).))).......... ( -35.20)
>DroYak_CAF1 31099 119 - 1
AUCGCUGGCUCCAGUUUCCAACUUCGCAUAAUGUUAACGUUAGCAUUACCGUGUAAGUUUCUGGUGCAAGCUGCCAGCUUCGCAUAGAUUAAUCAACACUGGAGUGAGCUGCCAGCCUU
...(((.((((((((....((((((((.((((((((....))))))))..))).)))))((((.(((((((.....)))).))))))).........)))))))).))).......... ( -39.60)
>consensus
AUCGCUAGCUCCAGUUUCCAACUUCGCAUGAUGUUAACAUUAGCAUUAACGUGUAAGUUUCUGGCGAAAGCUGCAAG_____CAUAGAUUAAUCAACACUGGAGUGAGCUGCCAGCCUU
...(((.((((((((.....(((((((.((((((((....))))))))..))).))))..((((((.....))))))....................)))))))).))).......... (-25.67 = -26.17 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:34 2006