Locus 8697

Sequence ID X_DroMel_CAF1
Location 22,084,635 – 22,084,734
Length 99
Max. P 0.835987
window14295

overview

Window 5

Location 22,084,635 – 22,084,734
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 96.63
Mean single sequence MFE -26.73
Consensus MFE -24.74
Energy contribution -24.30
Covariance contribution -0.44
Combinations/Pair 1.09
Mean z-score -2.12
Structure conservation index 0.93
SVM decision value 0.73
SVM RNA-class probability 0.835987
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22084635 99 + 22224390
CCGGAACUCCAAUGGCAACGCUAAUCCAGCCAUGGUCCAGGAUCACAACAAGAAGCAAAAUCCUGACCAGGACCUGGACAACGUAGUCGGUCAGGAUAA
((((....))..((((...((((.(((((((.(((((.(((((................))))))))))))..))))).....))))..)))))).... ( -28.99)
>DroSec_CAF1 149193 99 + 1
CCGGAACUCCAAUGGUAACGCUAAUCCAGCCAUAGUCCAGGAUCACAACAAGAACCAAAAUCCUGACCAGGACCUGGACAACGUCGUCGGUCAGGACAA
..(((.((...(((((............)))))))))).((.((.......)).))....(((((((((.(((.(.....).))).).))))))))... ( -25.60)
>DroSim_CAF1 121847 99 + 1
CCGGAACUCCAAUGGUAACGCUAAUCCAGCCAUAGUCCAGGAUCACAACAAGAACCAAAAUCCUGACCAGGACCUGGACAACGUCGUCGGUCAGGACAA
..(((.((...(((((............)))))))))).((.((.......)).))....(((((((((.(((.(.....).))).).))))))))... ( -25.60)
>consensus
CCGGAACUCCAAUGGUAACGCUAAUCCAGCCAUAGUCCAGGAUCACAACAAGAACCAAAAUCCUGACCAGGACCUGGACAACGUCGUCGGUCAGGACAA
..((....)).(((((............))))).(((((((.((.......)).......((((....)))))))))))......(((......))).. (-24.74 = -24.30 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:33 2006