Locus 8696

Sequence ID X_DroMel_CAF1
Location 22,083,555 – 22,083,675
Length 120
Max. P 0.659028
window14294

overview

Window 4

Location 22,083,555 – 22,083,675
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.44
Mean single sequence MFE -39.42
Consensus MFE -22.85
Energy contribution -22.77
Covariance contribution -0.08
Combinations/Pair 1.09
Mean z-score -1.94
Structure conservation index 0.58
SVM decision value 0.26
SVM RNA-class probability 0.659028
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22083555 120 - 22224390
UAGCGGCGCGUCACAAAACUGCUGCGGCUCCAUACGGCCGAACACCUUGCCCCGCAGCUCCGUUGGGUGUUCGCACCUUAGGUAAUUAAUGGAAUCGCCGCCCAGACCUCCGGUCAGUCC
..((((((..((.((.....(((((((........(((..........)))))))))).((...(((((....)))))..)).......))))..))))))...((((...))))..... ( -41.60)
>DroVir_CAF1 140009 104 - 1
UAAUGGGGCAUCACAAAAUUGCUGCGGCUCCAUGCGGCCAAACACCUUGCCGCGCAGCUCCGUUGGGUGUUCGCACCUCAGAUAAUUAAUGUUAUCGCCGCCCG----------------
.....((((....(((....((((((....)..(((((..........))))))))))....)))((((....))))...((((((....))))))...)))).---------------- ( -38.10)
>DroGri_CAF1 103934 104 - 1
UAAUGGCGCGUCACAAAAUUGCUGCGGCUCCAUGCGGCCAAACACCUUGCCACGCAGCUCCGUUGGGUGUUCGCACCUGAGAUAAUUAAUGUUAUCGCCCCCGG----------------
....((((((.(((..(((.((((((((.....))(((..........))).))))))...)))..)))..)))......((((((....))))))))).....---------------- ( -34.70)
>DroEre_CAF1 116590 120 - 1
UAGCGGCGCGUCGCAAAACUGCUGCGGCUCCAUCCUGCCGAACACCUUGCCCCGCAGCUCCGUCGGGUGUUCGCACCUCAGGUAAUUAAUGGAAUCGCCGCCCAGCCCUCUGGUCAGUCC
..((((((.((((((.......))))))(((((((((.(((((((((.((...........)).))))))))).....))))......)))))..))))))((((....))))....... ( -43.70)
>DroMoj_CAF1 120610 104 - 1
UAAUGGGGCAUCACAAAAUUGCUGCGGCUCCAUGCGGCCAAACACCUUGCCGCGCAGCUCCGUCGGGUGUUCGCACCUCAGAUAAUUAAUGUUAUCACCGCCCG----------------
.....((((...........((((((....)..(((((..........))))))))))......(((((....)))))..((((((....))))))...)))).---------------- ( -36.50)
>DroAna_CAF1 87535 102 - 1
UAGCGGGGCAUCGCAGAACUGCUGCGGCUCCAUUUUGCCAAACACCUUGCCCCGCAGCUCCGAGGGGUGUUCGCACCUCAGGUAAUUAAUGGAAUCCCC------------------UCC
..((((((((..((((.....))))(((........)))........))))))))......((((((.((((.((..............))))))))))------------------)). ( -41.94)
>consensus
UAACGGCGCAUCACAAAACUGCUGCGGCUCCAUGCGGCCAAACACCUUGCCCCGCAGCUCCGUUGGGUGUUCGCACCUCAGAUAAUUAAUGGAAUCGCCGCCCG________________
....((((.((..((.....((((((((........)))...(.....)....)))))......(((((....)))))...........))..))))))..................... (-22.85 = -22.77 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:32 2006