Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 22,077,748 – 22,077,854 |
Length | 106 |
Max. P | 0.500000 |
Location | 22,077,748 – 22,077,854 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 84.36 |
Mean single sequence MFE | -31.96 |
Consensus MFE | -20.28 |
Energy contribution | -21.84 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.78 |
Structure conservation index | 0.63 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 22077748 106 + 22224390 AGGCCCCAAGGGCAAGUCGUCGAAGAUCAACGAUCCUCCACGUCGUGGCUCUUCACCGUCUGCUGGUGCAGAACCUACUCGCCAAAAACAAAGCGUUCAAAAUCAA .(((...((((((..(.(((.((.((((...)))).)).))).)...)))))).....(((((....)))))........)))....................... ( -27.50) >DroSec_CAF1 142433 103 + 1 AGGCCCCAAGGGCAGGUCGUCA---AUCAACGAUCUACCACGUCGCGGUUCUUCACCGUCCACUGGUGCAGAACCUAGUCGCCAAAAACAAAGCGGUCAAAACCAA .(((..(...((.(((((((..---....))))))).)).......((((((.(((((.....))))).))))))..)..)))...........(((....))).. ( -33.40) >DroSim_CAF1 114971 103 + 1 AGGCCCCAAGGGCAGGUCGUCA---AUCAACGAUCUACCACGUCGCGGUUCUUCACCGUCCACUGGUGCAGAACCUAGUCGCCAAAAACAAAGCGGUCAAAACCAA .(((..(...((.(((((((..---....))))))).)).......((((((.(((((.....))))).))))))..)..)))...........(((....))).. ( -33.40) >DroEre_CAF1 109589 103 + 1 CGGCUCCAAGGGCAGGUCGUCA---GCCAACGAUCGACCACGUCAGGGUUCCUCCCCGUCCACUAGCGCAGAGGCUAGUCGCCAAAGACAUGGUGGUCAAAGCCAA .((((....((((.(((((((.---......)).)))))......(((......)))))))((((((......))))))(((((......))))).....)))).. ( -37.80) >DroYak_CAF1 121962 103 + 1 UAGUUCCAAGGGCAAGUCGUCA---ACCAACGAUCGACCACGUCGAGGUUCUUCCCCGACCACUGGUGCAGAACCUAGUCGCCAAAAACACAGCGGUCAGGACCAA ..(.(((..(((.(((((((..---....))))(((((...)))))....))).)))((((.(((((((.((......)))).....)).))).)))).))).).. ( -27.70) >consensus AGGCCCCAAGGGCAGGUCGUCA___AUCAACGAUCGACCACGUCGCGGUUCUUCACCGUCCACUGGUGCAGAACCUAGUCGCCAAAAACAAAGCGGUCAAAACCAA .(((.....((...((((((.........))))))..)).......((((((.(((((.....))))).)))))).....)))...........(((....))).. (-20.28 = -21.84 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:31 2006