| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 22,076,164 – 22,076,281 |
| Length | 117 |
| Max. P | 0.656333 |
| Location | 22,076,164 – 22,076,281 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -27.61 |
| Consensus MFE | -16.84 |
| Energy contribution | -16.16 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 22076164 117 - 22224390 CAACUGUCAUAAAAAUAAAAGCUGACCAAGCAAAGGCCACUCAAUGAUAGAUAACAACUUUUUUGCUUUGUGGUUGCCACCU-UAGGUCACCGCAGUAACGAAUUCUCAAGCAAUUUA ...(((((((..........(((.....)))..((....))..)))))))............((((((((((((.(((....-..))).)))))).....((....)))))))).... ( -26.10) >DroSec_CAF1 140837 117 - 1 CAACUGUCAUAAAAAUAAAUGGUGACCAAGCAAAGGCCACUCAAUGAGAGGUAAAACCCUUUUUGCUUCCGGGUUGCCACCU-AAGGUCACCUCAGUAACGAAUUCUCAAGCAAUUUA ..((((..............(((((((.......(((.((((...(.(((((((((....)))))))))))))).)))....-..))))))).))))..................... ( -28.18) >DroSim_CAF1 113371 111 - 1 CAACUGUCAUCAAAAUAAAUGGUGACCAAGCAAAGGCCACUCAAUGAGAGGUAAAACCCUUUUUGGUUCGGGGUUGCCACCU-AAGGUCACCUCAGUAACGAAUUCUCAAGC------ ..((((..............(((((((.......(((.((((...((((((......)))))).......)))).)))....-..))))))).))))...............------ ( -26.78) >DroEre_CAF1 107929 118 - 1 CAACUGUCACAAAAAUGAAAGGUAGCCAGGCAAAGGCAACUCGAUGGGAGAAAACACCUUUCUCGGUCCUUGGUUGCCACCUUAAGGUCACCUUAAAAUCGAAAUCCUAAGCAAUUUA ..................(((((..(((((....((((((.(((.((((((((.....))))))...))))))))))).)))...))..)))))........................ ( -27.80) >DroYak_CAF1 120367 118 - 1 CAACUGUCACAAAAAUGAAAGGUAACCAGGAAAAGGCAACUCGAUGGGAGGUAACCCCUUUCUUGGUCCUUGGUUACCACCUUAAGGUCACCUUAAAAACCAAAUCUCAAGCAAUGUA ...............(((..(((((((((((..((....))(((.(..(((.....)))..)))).))).))))))))...((((((...))))))..........)))......... ( -29.20) >consensus CAACUGUCAUAAAAAUAAAAGGUGACCAAGCAAAGGCCACUCAAUGAGAGGUAACACCUUUUUUGGUUCGUGGUUGCCACCU_AAGGUCACCUCAGUAACGAAUUCUCAAGCAAUUUA ....................(((((((.......(((.(((.(((((((((.......))))))).))...))).))).......))))))).......................... (-16.84 = -16.16 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:30 2006