| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 22,075,633 – 22,075,741 |
| Length | 108 |
| Max. P | 0.523141 |
| Location | 22,075,633 – 22,075,741 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 84.44 |
| Mean single sequence MFE | -38.67 |
| Consensus MFE | -24.16 |
| Energy contribution | -25.83 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 22075633 108 + 22224390 CGAUAGUCGAUGUCGAUAGUUAUCGAUGCCUAUGUUGCAAGCUGUGUGGCA---------CUCCGCCCUGAGAAAAGCCUGAGCUAGGGGCACUGCCACUAAAAAAAAGAAGGCAGU (((((((((....))))...))))).(((((.....((.....))((((((---------....(((((......(((....))).)))))..))))))...........))))).. ( -31.90) >DroSec_CAF1 140366 113 + 1 CGUGAG---ACGUCGAUAGUUAUCGAUGCUUAUGGUGCGAGCUGUGGGGCACGAGGGAAACUCUGCCCUGAGAAAAGCCUGAGCUAGCGGCACUGCCACUAAGA-AAAGAAAGCAGU ((((((---.(((((((....)))))))))))))......(((((((((((.(((.....)))))))))......(((....))).)))))(((((..((....-..))...))))) ( -41.40) >DroSim_CAF1 112898 113 + 1 CGUGAG---ACGUCGAUAGUUAUCGAUGCUUAUGGUGCGAUCUGUGGGGCACGAGGGAAACUCUGCCCUGAGAAAAGCCUGAGCUAGCGGCAGUGCCACCAAGA-AAAGAAAGCAGU ((((((---.(((((((....))))))))))))).(((..(((.(((((((((((.....)))((((((......(((....))))).))))))))).)))...-..)))..))).. ( -42.70) >consensus CGUGAG___ACGUCGAUAGUUAUCGAUGCUUAUGGUGCGAGCUGUGGGGCACGAGGGAAACUCUGCCCUGAGAAAAGCCUGAGCUAGCGGCACUGCCACUAAGA_AAAGAAAGCAGU ...........((((((....))))))((((.((((.((.(((.(((((((.(((.....)))))))))).....))).)).))))..(((...))).............))))... (-24.16 = -25.83 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:29 2006