Locus 8691

Sequence ID	X_DroMel_CAF1
Location	22,071,117 – 22,071,219
Length	102
Max. P	0.818908

overview

Window 6

Location	22,071,117 – 22,071,219
Length	102
Sequences	6
Columns	105
Reading direction	forward
Mean pairwise identity	79.90
Mean single sequence MFE	-36.82
Consensus MFE	-27.19
Energy contribution	-27.75
Covariance contribution	0.56
Combinations/Pair	1.12
Mean z-score	-1.59
Structure conservation index	0.74
SVM decision value	0.67
SVM RNA-class probability	0.818908
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22071117 102 + 22224390
UUAAUUCGU-UC-CAUU-UUCAGGACUAUUCCUGGAGUGCCCCGGCACGACGGCGAUAUCGCUGCGCUCAACACUCGAGAGAAUAUCGGCGCCGAUCCACUCGCU
......(((-(.-....-(((((((....)))))))((((....))))))))((((.((((..(((((......((....)).....)))))))))....)))). ( -32.90)
>DroVir_CAF1 126103 94 + 1
----------GU-UAUUUCGCAGGCCUGUUUCUGGAGUGUCCUGGCACGACGGCGCUGUCGCUGCGCUCGACGCUGGAACGCAUCUCGGCGCCAAUACACUCGCU
----------..-.......((((......))))((((((..((((....((((((.......)))).))..((((((.....)).))))))))..))))))... ( -32.90)
>DroGri_CAF1 92211 102 + 1
--UAUCGGUUGCAUGUU-CGCAGGACUUUUCCUCGAGUGUCCUGGCACUACGGCUCUGUCGCUGCGCUCAACGCUGGAACGCAUCUCGGCGCCGAUACACUCGUU
--(((((((....((..-((((((((....((...(((((....)))))..))....))).)))))..))..((((((.....)).)))))))))))........ ( -35.10)
>DroSim_CAF1 107733 102 + 1
UUAAUUCGC-CC-UAUU-UUCAGGACUUUUCCUGGAGUGUCCCGGCACGACGGCGAUAUCGCUGCGCUCAACCCUCGAGCGAAUAUCGGCGCCGAUCCACUCGCU
.......((-..-....-..(((((....)))))(((((...((((.((((((((....)))))(((((.......)))))....)))..))))...))))))). ( -38.70)
>DroYak_CAF1 113072 102 + 1
UGAAAUUGU-CC-GAUU-UUCAGGACUAUUCCUGGAGUGUCCUGGCACGACGGCGAUAUCGCUGCGCUCAACCCUCGAGCGAAUAUCGGCGCCGAUCCACUCGCU
.((((((..-..-))))-))(((((....)))))(((((...((((.((((((((....)))))(((((.......)))))....)))..))))...)))))... ( -36.50)
>DroMoj_CAF1 103668 103 + 1
UUGAGCUGUGGC-UAUU-UGCAGGCCUCUUUCUGGAGUGUCCCGGGACGACGGCGCUGUCGCUGCGCUCGACGCUGGAGCGCAUCUCGGCGCCGAUACACUCGCU
..(((.((((((-(...-....))))((.((((((......)))))).))((((((((....(((((((.......)))))))...))))))))..))))))... ( -44.80)
>consensus
UUAAUUCGU_GC_UAUU_UGCAGGACUAUUCCUGGAGUGUCCCGGCACGACGGCGAUAUCGCUGCGCUCAACGCUCGAGCGAAUAUCGGCGCCGAUACACUCGCU
....................((((......))))(((((...((((.((((((((....)))))(((((.......)))))....)))..))))...)))))... (-27.19 = -27.75 +   0.56)

alignment

secondary structure

dotplot

Window 7

Location	22,071,117 – 22,071,219
Length	102
Sequences	6
Columns	105
Reading direction	reverse
Mean pairwise identity	79.90
Mean single sequence MFE	-37.95
Consensus MFE	-26.56
Energy contribution	-27.50
Covariance contribution	0.94
Combinations/Pair	1.08
Mean z-score	-1.64
Structure conservation index	0.70
SVM decision value	0.62
SVM RNA-class probability	0.802753
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22071117 102 - 22224390
AGCGAGUGGAUCGGCGCCGAUAUUCUCUCGAGUGUUGAGCGCAGCGAUAUCGCCGUCGUGCCGGGGCACUCCAGGAAUAGUCCUGAA-AAUG-GA-ACGAAUUAA
.((((....((((((((((((((((....)))))))).))))..)))).))))((((((((....))))..(((((....)))))..-....-).-)))...... ( -38.00)
>DroVir_CAF1 126103 94 - 1
AGCGAGUGUAUUGGCGCCGAGAUGCGUUCCAGCGUCGAGCGCAGCGACAGCGCCGUCGUGCCAGGACACUCCAGAAACAGGCCUGCGAAAUA-AC----------
.((((((((.(((((((.(((((((......)))))(.((((.......))))).))))))))).)))))).((........))))......-..---------- ( -35.10)
>DroGri_CAF1 92211 102 - 1
AACGAGUGUAUCGGCGCCGAGAUGCGUUCCAGCGUUGAGCGCAGCGACAGAGCCGUAGUGCCAGGACACUCGAGGAAAAGUCCUGCG-AACAUGCAACCGAUA--
..(((((((...(((((....(((.((((...(((((....)))))...))))))).)))))...)))))))((((....))))((.-.....))........-- ( -35.20)
>DroSim_CAF1 107733 102 - 1
AGCGAGUGGAUCGGCGCCGAUAUUCGCUCGAGGGUUGAGCGCAGCGAUAUCGCCGUCGUGCCGGGACACUCCAGGAAAAGUCCUGAA-AAUA-GG-GCGAAUUAA
.(((((((..(((((((.(((...(((((((...)))))))..(((....))).))))))))))..)))))(((((....)))))..-....-..-))....... ( -42.80)
>DroYak_CAF1 113072 102 - 1
AGCGAGUGGAUCGGCGCCGAUAUUCGCUCGAGGGUUGAGCGCAGCGAUAUCGCCGUCGUGCCAGGACACUCCAGGAAUAGUCCUGAA-AAUC-GG-ACAAUUUCA
.(.(((((..(.(((((.(((...(((((((...)))))))..(((....))).)))))))).)..)))))).(((((.((((....-....-))-)).))))). ( -39.00)
>DroMoj_CAF1 103668 103 - 1
AGCGAGUGUAUCGGCGCCGAGAUGCGCUCCAGCGUCGAGCGCAGCGACAGCGCCGUCGUCCCGGGACACUCCAGAAAGAGGCCUGCA-AAUA-GCCACAGCUCAA
(((((((((..((((((...(((((......)))))..)))).(((((......)))))..))..))))))........(((.....-....-)))...)))... ( -37.60)
>consensus
AGCGAGUGGAUCGGCGCCGAGAUGCGCUCCAGCGUUGAGCGCAGCGACAGCGCCGUCGUGCCAGGACACUCCAGGAAAAGUCCUGAA_AAUA_GC_ACAAAUUAA
...(((((..(((((((........((((.......))))((.(((....))).)).)))))))..)))))((((......)))).................... (-26.56 = -27.50 +   0.94)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:25 2006