Locus 8689

Sequence ID X_DroMel_CAF1
Location 22,058,718 – 22,058,835
Length 117
Max. P 0.951699
window14283

overview

Window 3

Location 22,058,718 – 22,058,835
Length 117
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 65.07
Mean single sequence MFE -27.82
Consensus MFE -14.43
Energy contribution -16.50
Covariance contribution 2.07
Combinations/Pair 1.08
Mean z-score -1.94
Structure conservation index 0.52
SVM decision value 1.41
SVM RNA-class probability 0.951699
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22058718 117 + 22224390
UCUUAGCCGAGAGAAAA-GAGCCGAUGCGCGGCAUUAGGGAACUCUUUUCAAAGAGCGCGCUGAAGCCGCGCUCAGUUUUCAUUGCUCUUAAGUUGCAACUGCACAAAGAAAUCAUUU
((((....(((((...(-((((.((.(((((((.((((.(..(((((....)))))..).)))).))))))))).))))).....)))))..((.((....)))).))))........ ( -40.00)
>DroSec_CAF1 116992 95 + 1
UCUUAGCUAAGAGAAACAAAGCCGAUGGGCGGCAUUAA-AAACUCUCUUCAU----------------------AGUUUUCCCUGCUCUUAAGUUGCAACUGCACUGAGAAGGCAUUU
((((((.((((((.......((((.....))))....(-(((((........----------------------)))))).....))))))...(((....)))))))))........ ( -21.30)
>DroSim_CAF1 95074 96 + 1
UCUUAGCUAAGAGAAACGAAGCCGAUGCGCGGCAUUAAAAAACUCUCUUCAU----------------------AGUUUUCCCUGCUCUUAAGUUGCAACUGCACUGAGAAGGCAUUU
((((((.((((((.......((((.....)))).....((((((........----------------------)))))).....))))))...(((....)))))))))........ ( -21.30)
>DroEre_CAF1 91874 94 + 1
UCUUUGUCAAGAGAAGCAAA-----------------UAAAACUCUCUUCGAAGAGCGCGCUUAAGCCGCGCUCAGAUCUCACUACUCUUAAGCUGCAACUGCACUGAGCA-------
((((((..((((((......-----------------......))))))))))))(((.((....)))))((((((.........((....)).(((....))))))))).------- ( -26.00)
>DroYak_CAF1 101159 108 + 1
UCUGAGCCAAGAGAAACGAAGUG----------UUUAGAGAACUCUUUUUAAAGAGCGCGCUUAAGCCGCGCUCAGUUUUUACUGCUCUUAAUUUGCAACUGCACUGAGAAAUCAUAU
...((((....((((((((((.(----------(((...)))).)))).....((((((((....).))))))).))))))...))))......(((....))).(((....)))... ( -30.50)
>consensus
UCUUAGCCAAGAGAAACAAAGCCGAUG_GCGGCAUUAAAAAACUCUCUUCAAAGAGCGCGCU_AAGCCGCGCUCAGUUUUCACUGCUCUUAAGUUGCAACUGCACUGAGAAAGCAUUU
((((((..(((((.......((((.....))))....................(((((((.......)))))))...........)))))....(((....)))))))))........ (-14.43 = -16.50 +   2.07)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:22 2006