Locus 8688

Sequence ID X_DroMel_CAF1
Location 22,052,207 – 22,052,305
Length 98
Max. P 0.605892
window14282

overview

Window 2

Location 22,052,207 – 22,052,305
Length 98
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 90.87
Mean single sequence MFE -20.62
Consensus MFE -16.26
Energy contribution -16.66
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.79
SVM decision value 0.15
SVM RNA-class probability 0.605892
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22052207 98 + 22224390
----AAACACGCGUUUUCAUUUUGCGCGGAUCCGAAAACUUGCAAUGCAAAUGCUUUGCAUUCUAUCAACCCACUCCCACUGGCCGCCUCUCACCUGCCACG
----.....(((((.........))))).....((.....(((((.((....)).))))).....)).............((((.(........).)))).. ( -18.70)
>DroSec_CAF1 110778 98 + 1
----AAACUCGCGUUUUCAUUUUGCGCGGAUCCGAAAACUUGCAAUGCAAAUGCUUUGCAUUCCAUCAACACACUCCCACUGGCCGCCUCUCACCUGCCACG
----....((((((.........))))))....((.....(((((.((....)).))))).....)).............((((.(........).)))).. ( -18.80)
>DroSim_CAF1 90255 98 + 1
----AAACACGCGUUUUCAUUUUGCGCGGAUCCGAAAACUUGCAAUGCAAAUGCUUUGCAUUCCAUCAACACACUCCCACUGGCCGCCUCUCACCUGCCACG
----.....(((((.........))))).....((.....(((((.((....)).))))).....)).............((((.(........).)))).. ( -18.70)
>DroEre_CAF1 85037 101 + 1
UGGCAAACACGCGUUUUCAUUUCGCGCGAAUCCAAAAACUUGCCAUGCAAAUGCUUUGCAUUCCAUCAACCCACGCCC-CUGGCCACCUCUCACCUGCCACG
(((((....(((((.........)))))............((..((((((.....))))))..)).........(((.-..)))...........))))).. ( -19.20)
>DroYak_CAF1 94445 100 + 1
UGGCAAACACGCGUUUUCAUUUUGCGCGGAUCCAA-AACUUGCAAAGCAAAUGCUUUGCAUUCCAUCAACGCCCGCUCACUGGCCGCC-CUCACCUGCCACG
(((((....(((((.........)))))((.....-....((((((((....))))))))..........(((........)))....-.))...))))).. ( -27.70)
>consensus
____AAACACGCGUUUUCAUUUUGCGCGGAUCCGAAAACUUGCAAUGCAAAUGCUUUGCAUUCCAUCAACACACUCCCACUGGCCGCCUCUCACCUGCCACG
.........(((((.........)))))............(((((.((....)).)))))....................((((.(........).)))).. (-16.26 = -16.66 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:21 2006