Locus 8687

Sequence ID X_DroMel_CAF1
Location 22,050,986 – 22,051,080
Length 94
Max. P 0.939503
window14281

overview

Window 1

Location 22,050,986 – 22,051,080
Length 94
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 74.81
Mean single sequence MFE -31.32
Consensus MFE -19.40
Energy contribution -22.35
Covariance contribution 2.95
Combinations/Pair 1.10
Mean z-score -1.83
Structure conservation index 0.62
SVM decision value 1.30
SVM RNA-class probability 0.939503
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22050986 94 - 22224390
----------UUUGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUGGAGCGGAUUCCCAUGAACCGUAGGCGCCCCUAGCUG-----
----------.......(((((((.((((((((((((((((...))))))))))))).((.((.....))((((.(((....)))))))..))))).)))))))----- ( -37.60)
>DroSec_CAF1 109590 91 - 1
----------UUUGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCAUCUGGAGCGGAUUCCCAUGAACUGUAGACGCCCUCAG--------
----------....((((((((.(((.((((((((((((((...)))))))))))))).).((.....))))((....))...))))))))..........-------- ( -34.60)
>DroSim_CAF1 88845 91 - 1
----------UUGGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUGUGCUGUAUGUGGCAUCAUCUGGAGCGGAUUCCCAUGAACUGUAGACGCCCUCUG--------
----------..((((((((((.(((.(((((((((((.........))))))))))).).((.....))))((....))...)))))))...))).....-------- ( -31.90)
>DroEre_CAF1 83942 80 - 1
-----------------------CUGGUGCA-GCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUAGAGCGGAUUCCCAUGAACCGUAGGCGCCCUCAGCUG-----
-----------------------..(((((.-(((((((((...)))))))))(((.((.((((.(....).)))).))))).........)))))........----- ( -24.10)
>DroYak_CAF1 93232 104 - 1
GUGCUGCAUAUUGGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUGGAGCGUAUUCCCAUGAACCGAAGUCGCCCUCAGCUG-----
..((((.......(((((.....)))))(((((((((((((...)))))))))))))(((..((((.((..(((......)))..))))))..)))..))))..----- ( -40.70)
>DroAna_CAF1 58108 80 - 1
-----------------------CUG----UUGCAGC--UUCGUGUUUACUGUGUGUGGCAUCUUCUGGAGCGGAUUCCCAUGAACUGAUGGCGCCCUCAACAGAACAA
-----------------------(((----(((..((--(.((..(.....)..)).))).......((.(((.....((((......))))))))).))))))..... ( -19.00)
>consensus
__________UU_GCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUGGAGCGGAUUCCCAUGAACCGUAGGCGCCCUCAGCUG_____
.............(((((.....)))))(((((((((((((...)))))))))))))(((.((.....))((((.(((....)))))))....)))............. (-19.40 = -22.35 +   2.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:20 2006