Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 22,050,594 – 22,050,701 |
Length | 107 |
Max. P | 0.810066 |
Location | 22,050,594 – 22,050,701 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 75.29 |
Mean single sequence MFE | -23.36 |
Consensus MFE | -8.96 |
Energy contribution | -8.84 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.29 |
Mean z-score | -1.95 |
Structure conservation index | 0.38 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 22050594 107 + 22224390 GUCAAUUCAAUUGCUUCGCACUACAUAACAUUGACAGCGGCAAAGUUAGCAACUCCCGAUGCUGGUGCUAUGUACAUACAUACAUAUAUUUGUUAUUCAGUGCACUC .................(((((..((((((....(((((....(((.....))).....)))))(((.(((((....)))))))).....))))))..))))).... ( -23.00) >DroSec_CAF1 109269 83 + 1 GUCAUUUCAUUUGCUUCGCACUACAAAACAUUGACAGCCGCAAAGUUAGCAACUUCCGG------------------------AUGUAUUUGUUAUUUAGUGCACUA .................((((((.(.((((...(((.(((..((((.....)))).)))------------------------.)))...)))).).)))))).... ( -19.10) >DroSim_CAF1 88518 89 + 1 GUCGAUUCAAUUGCUUCGCACUACAAAACAUUGACAGCCGCAAAUGUAGCAACUCCCGAUGCU------------------ACAUAUAUUUGUUAUUUAGUGCACUA .................((((((.(.(((((((.(....))))((((((((........))))------------------)))).....)))).).)))))).... ( -19.20) >DroEre_CAF1 83551 103 + 1 AUCAAUUCAAUUGCUUCGCACUACAAAACAUUGACAGCGGUGAAGCUUGCAACUCCGCAUGCUGGUGCUGUG----UACAUAUACGUAUAUGGUACUCAGUGCACUC .................(((((......(((((....))))).(((.(((......))).)))(((((((((----(((......)))))))))))).))))).... ( -29.30) >DroYak_CAF1 92857 107 + 1 AUCAAUUCAAUUGCUUCGCACUACAAAACAUUGACAGCGGUAAAGCUUGCAACUCUUGAUGCUGGUGCUGAGCACAUACAUAUAUGUAUAUGUUAUUGAGUGCACUC ....((((((((((((.((((((.....(((..(.((..(((.....)))..)).)..))).)))))).)))))...((((((....)))))).)))))))...... ( -26.20) >consensus GUCAAUUCAAUUGCUUCGCACUACAAAACAUUGACAGCGGCAAAGCUAGCAACUCCCGAUGCUGGUGCU__G____UACAUACAUGUAUUUGUUAUUCAGUGCACUC .................(((((......(((((..((..((.......))..))..)))))........................(((.....)))..))))).... ( -8.96 = -8.84 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:19 2006