Locus 8685

Sequence ID X_DroMel_CAF1
Location 22,024,981 – 22,025,078
Length 97
Max. P 0.779957
window14279

overview

Window 9

Location 22,024,981 – 22,025,078
Length 97
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 81.18
Mean single sequence MFE -24.48
Consensus MFE -14.12
Energy contribution -14.08
Covariance contribution -0.04
Combinations/Pair 1.18
Mean z-score -2.12
Structure conservation index 0.58
SVM decision value 0.55
SVM RNA-class probability 0.779957
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22024981 97 - 22224390
CUGUGCUAG----AACUUGGACG---AAUUUAUGGCCAAGUGUGCGUUGUAAAAUGAAACUUCUGUUUAUUUAAAUAUGAAGCAGAAAGGCAUACACACAAUCA
.((((....----...((((.((---......)).))))(((((((((.........)))((((((((((......))).)))))))..)))))).)))).... ( -19.90)
>DroSec_CAF1 87403 97 - 1
CUGUGCUAU----AUCUUGGACG---AAUUUAUGGUGCAGUGUGCGUGGUAACAGAAAACUUUUGAUUAUUUAAAUAUUAAGCAGGAAGGCACACACACAAUCA
(((..((((----(..((.....---))..)))))..)))((((.(((((((((((.....)))).))))...........((......)).))).)))).... ( -20.60)
>DroSim_CAF1 66109 98 - 1
CUGUGCUAUAUAUAUCUUGGACG---AAUUUAUGGUGCAGUGUGCGUGGUAAAAGAAAACUUUUGUUUAUUUAAAUAUUAAGCAGGAAGGCACACACACAA---
.((..(((((.((.((......)---))).)))))..))(((((.(((((........))(((((((((.........)))))))))...))).)))))..--- ( -23.30)
>DroEre_CAF1 61494 100 - 1
CCGUGCCAG----AACUGGGACGGAAAAAUUCUGGUCCAGUGUGCGUGGUAAAAGGAAACUUCUGUUUAUUUAAAUAUUAAGCAGAAAUGCACACACACAAUCA
((((.(((.----...))).))))...............((((((((.......(....)(((((((((.........)))))))))))))))))......... ( -32.70)
>DroYak_CAF1 70215 94 - 1
UGGCACAAG----AAAUUGGACGAAAAAUUUGUGGCCCAGUGUGCGUGGUA---GGAAACUUCUGUUUAUUUAAAUAUUUAGCAGAAAUGCACACACACAA---
.(((.(((.----...))).((((.....)))).)))..((((((((....---(....)(((((((.............)))))))))))))))......--- ( -25.92)
>consensus
CUGUGCUAG____AACUUGGACG___AAUUUAUGGUCCAGUGUGCGUGGUAAAAGGAAACUUCUGUUUAUUUAAAUAUUAAGCAGAAAGGCACACACACAAUCA
.......................................((((((...((........))(((((((((.........)))))))))..))))))......... (-14.12 = -14.08 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:18 2006