Locus 8684

Sequence ID X_DroMel_CAF1
Location 22,020,463 – 22,020,553
Length 90
Max. P 0.614436
window14278

overview

Window 8

Location 22,020,463 – 22,020,553
Length 90
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 80.24
Mean single sequence MFE -28.67
Consensus MFE -17.76
Energy contribution -18.32
Covariance contribution 0.56
Combinations/Pair 1.23
Mean z-score -1.81
Structure conservation index 0.62
SVM decision value 0.16
SVM RNA-class probability 0.614436
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22020463 90 - 22224390
AGAAGCGCCAGGAAAAUGUUGGCAUAGGGGCGAGAUUUUAGGGGUUUUAGGUGGAGUGGGG-----UCCCGGAACUUCAUGCAAACCAGGGGA------GA
.(((((.((...(((((.(((.(.....).))).))))).)).))))).(((...((((((-----(......)))))))....)))......------.. ( -23.40)
>DroSec_CAF1 83102 89 - 1
AAAAGCGCCAGCAAAAUGUUGGCAUAGGGGUGGGAUCUUAUGAGUUUUAG-UUGAGUGGGG-----UCGCGGAACUCAAUGCAAACCAGAGGA------GG
....((((((((.....))))))...(((.((.((((((((..(......-.)..))))))-----)).))...)))...))...........------.. ( -23.60)
>DroSim_CAF1 61711 95 - 1
AAAAGCGCCAGCAAAAUGUUGGCAUAGGGGUGGGAUCUUAUGAGUUUUAGGUUGAGUGGGGUUGGGUCCCGGAACUCCAUGCAAACCAGAGGA------GG
.(((((((((((.....))))))((((((......))))))..))))).((((..((((((((.(....).).)))))))...))))......------.. ( -30.60)
>DroEre_CAF1 57235 94 - 1
AGAAGCGCCAGGAAAAUGUUGGCAUAGGGGUGGCAUUUUAGGGGCUUAAA-UGGAGUGGGG-----UCCCGGGACUCCGCGCA-UCCGGGGGAUCCGGGGG
....(((((...(((((((((.(.....).)))))))))...))).....-....((((((-----((....)))))))))).-(((((.....))))).. ( -37.10)
>consensus
AAAAGCGCCAGCAAAAUGUUGGCAUAGGGGUGGGAUCUUAGGAGUUUUAG_UGGAGUGGGG_____UCCCGGAACUCCAUGCAAACCAGAGGA______GG
.(((((((((((.....)))))).(((((......)))))...)))))..(((((((.(((......)))...)))))))..................... (-17.76 = -18.32 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:17 2006