| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,991,055 – 21,991,153 |
| Length | 98 |
| Max. P | 0.982045 |
| Location | 21,991,055 – 21,991,153 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 96.84 |
| Mean single sequence MFE | -30.32 |
| Consensus MFE | -28.37 |
| Energy contribution | -28.85 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.982045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21991055 98 - 22224390 UAAUGCAAGCAUUUGGCACUGGAGCGUAGGAAAUGGGAGGGAAAUGGAAAACGUUUCCUGACAGCUCCCAGAGGUCAUUCAGGUUGGUCGAUGUCUGA .....((..((((.(((.(((((......((..(((((((((((((.....)))))))......))))))....)).)))))....)))))))..)). ( -29.50) >DroSec_CAF1 51571 98 - 1 UAAUGCAAGCAUUUGGCACUGGAGCGUAGGAAAUGGGAGGGAAAUGGAAAACGUUUCCUGACAGCUCCCAGAGGUCAUUCAGGUGGGUCGAUGUCUGU ....(((..((((.(((.(((((......((..(((((((((((((.....)))))))......))))))....)).)))))....)))))))..))) ( -30.40) >DroSim_CAF1 51162 97 - 1 UAAUGCAAGCAUUUGGCACUGGAGCGUAGGAAAUGGGAGGGAAAUGGAAAACGUUUCCUGACAGCUCCCAGAGGUCAUUCAGGUG-GUCGAAGUCUGA .....((..(.((((((.(((((......((..(((((((((((((.....)))))))......))))))....)).)))))...-)))))))..)). ( -29.90) >DroEre_CAF1 32728 97 - 1 UAAUGCAAGCAGUUGGCACUGGAGCGUAGGAAAUGGGAGGGAAAUGGAAAACGUUUCCUGACAGCUCCCAGAGGUCAUUC-GGUGGGUCGACGUCUGA ..((((...((((....))))..)))).(((..((...((((((((.....))))))))..))..)))((((.((((((.-....))).))).)))). ( -31.00) >DroYak_CAF1 40571 98 - 1 UAAUGCAAGCAUUUGGCACUGGAGCGUAGGAAAUGGUAGGGAAAUGGAAAACGUUUCCUGACAGCUCCCAGAGGUCAUUCAGGUGGGUCGAUGUCUGA ........((.....))...(((((.(((((((((................)))))))))...)))))((((.(((((((....)))).))).)))). ( -30.79) >consensus UAAUGCAAGCAUUUGGCACUGGAGCGUAGGAAAUGGGAGGGAAAUGGAAAACGUUUCCUGACAGCUCCCAGAGGUCAUUCAGGUGGGUCGAUGUCUGA ........((.....))...(((((.(((((((((................)))))))))...)))))((((.(((((((....)))).))).)))). (-28.37 = -28.85 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:09 2006