| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,978,966 – 21,979,064 |
| Length | 98 |
| Max. P | 0.985229 |
| Location | 21,978,966 – 21,979,064 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 84.06 |
| Mean single sequence MFE | -12.77 |
| Consensus MFE | -12.71 |
| Energy contribution | -12.27 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.36 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21978966 98 + 22224390 UCUUUCUUUGUUUUCUCAUUUGUUAUGCAAAAUUCUUGUUUCGCAAAUGAAAAUAAUACAAAAACAAACUAGUUUCUAUUUAAUAGGUCAUCUGUCCA ......(((((.((.((((((((...((((.....))))...)))))))).))....))))).......................((.(....).)). ( -14.20) >DroSec_CAF1 39839 80 + 1 UCUUUCUUUGUUUUCUUAUUUGUUAUGCAAAAUUGUUGUUUCACAAAUGAAAAUAAUACAAA------------------UAAUAGGUCAUCUGUCCA .......((((((((..((((((...((((.....))))...))))))))))))))......------------------.....((.(....).)). ( -12.20) >DroSim_CAF1 27067 80 + 1 UCUUUCUUUGUUUUCUUAUUUGUUAUGCAAAAUUGUUGUUUCACAAAUGAAAAUAGUACAAA------------------UAAUAGGUCAUCUGUCCA .......((((((((..((((((...((((.....))))...))))))))))))))......------------------.....((.(....).)). ( -11.90) >consensus UCUUUCUUUGUUUUCUUAUUUGUUAUGCAAAAUUGUUGUUUCACAAAUGAAAAUAAUACAAA__________________UAAUAGGUCAUCUGUCCA .......((((((((..((((((...((((.....))))...)))))))))))))).............................((.(....).)). (-12.71 = -12.27 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:08 2006