Locus 8674

Sequence ID X_DroMel_CAF1
Location 21,966,433 – 21,966,552
Length 119
Max. P 0.653770
window14262

overview

Window 2

Location 21,966,433 – 21,966,552
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.57
Mean single sequence MFE -33.56
Consensus MFE -25.74
Energy contribution -25.62
Covariance contribution -0.12
Combinations/Pair 1.12
Mean z-score -1.90
Structure conservation index 0.77
SVM decision value 0.25
SVM RNA-class probability 0.653770
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21966433 119 - 22224390
AGGCAUGCAACAUGCCAUGCCUGCCU-UUCUCCUUUUCGAGUUUUCCGCUUUUCCAGGAUUGGAUGGUGCCUGCACUUAUGUAGAUACAUUUUGCCUGAAGACUCUUAAUUUCUUGGGUA
((((((((.....).)))))))((((-.......((..((((((((.((...(((......)))..(((.(((((....))))).))).....))..))))))))..))......)))). ( -32.92)
>DroSec_CAF1 31554 120 - 1
AGGCAUGCAACAUGCCAUGCCUGCCUUUUCUUCUUUUCGAGUUUUCCGCUUUUCCAGGAUUCGAUGGUGCCUGCACUUAUGCAGAUACAAGUUGCCCGAAGACCCUUAAUUUCUUUGGUA
((((((((.....).)))))))((............(((((((((..........)))))))))..(((.(((((....))))).))).....))(((((((.........))))))).. ( -30.10)
>DroSim_CAF1 18247 120 - 1
AGGCAUGCAACAUGCCAUGCCUGCCUUUUCUUCUUUUCGAGUUUUCCGCUUUUCCAGGAUUCGAUGGUGCCUGCACUUAUGCAGAUACAAUUUGCCCGAAGACCCUUAAUUUCUUUGGUA
((((((((.....).)))))))((............(((((((((..........)))))))))..(((.(((((....))))).))).....))(((((((.........))))))).. ( -30.10)
>DroEre_CAF1 14141 119 - 1
AGGCAUGCAACAUGCCAUGCCUGCCU-UUCUCCUUUGCGAGUUUUCCGCUUUUCCAGGAUUGGAUGGUGCCUGCACUUAUGCAGAUACAAUUUGCCCGAGGACCCUUAAUUUCUUGGGUA
((((((((.....).)))))))(((.-(((((((..(((.......)))......))))..))).)))..(((((....)))))........((((((((((........)))))))))) ( -37.20)
>DroYak_CAF1 21166 119 - 1
AGGCAUGCAACAUGCCAUGCCUGCCU-CUCUCCUUUCCGAGUUUUCCGCAUUUCCAGGAUUGGAUGGUGCCUGCACUUAUGCAGAUACAAUUUGCCCGAGGACCCUUAAUUUCUUGGGUA
((((((((.....).)))))))((..-((.(((..(((..................)))..))).)).))(((((....)))))........((((((((((........)))))))))) ( -37.47)
>consensus
AGGCAUGCAACAUGCCAUGCCUGCCU_UUCUCCUUUUCGAGUUUUCCGCUUUUCCAGGAUUGGAUGGUGCCUGCACUUAUGCAGAUACAAUUUGCCCGAAGACCCUUAAUUUCUUGGGUA
((((((((.....).)))))))(((.....((((....((((.....))))....))))......)))..(((((....)))))........(((((.((((.........))))))))) (-25.74 = -25.62 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:03 2006