Locus 8673

Sequence ID X_DroMel_CAF1
Location 21,965,417 – 21,965,537
Length 120
Max. P 0.898602
window14261

overview

Window 1

Location 21,965,417 – 21,965,537
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 91.11
Mean single sequence MFE -44.43
Consensus MFE -39.23
Energy contribution -38.80
Covariance contribution -0.43
Combinations/Pair 1.18
Mean z-score -2.41
Structure conservation index 0.88
SVM decision value 1.00
SVM RNA-class probability 0.898602
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21965417 120 + 22224390
CUUUAAGCUGGAAUAUUUAAAGACUGGCUAACUGAGUGAGUCAUGGGUUGACUGCUUGAUUGGCUGAUCAACUUGCCAACGACCCGCGACCUGCGGCUGGUGACCCACUUAAUUGUUAGC
(((((((........)))))))....((((((((((((.(((..((((((((.(((.....))).).)))))))((((.....((((.....)))).))))))).))))))...)))))) ( -36.10)
>DroEre_CAF1 13023 120 + 1
CUUCGAGCUGGCAUAUUGAAAGAUUGACUAACUGAGUGGGUCAUGGGCCAACUGCUUGAUUGGCUGAUCGACUUGCCAACGAGCCGCGACCUGCGGCUGGUGACCCACUUAAUUGUUGGC
......((..(((.(((....)))........((((((((((((.((((....(((((.(((((..........)))))))))).((.....)))))).))))))))))))..)))..)) ( -50.70)
>DroYak_CAF1 20021 120 + 1
CUUUAAGCUGGCAUAUUGAAAGAUUGACUAACUGAGUGGGUCAUGGGCUAACUGCUUGAUUGGCUGAUUGACUUGCCAACGAGGCGCGUCCUGCGGCUGGUGACCCACUUAAUUGUUGGC
......((..(((.(((....)))........((((((((((((.((((....((((..(((((..........)))))..))))((.....)))))).))))))))))))..)))..)) ( -46.50)
>consensus
CUUUAAGCUGGCAUAUUGAAAGAUUGACUAACUGAGUGGGUCAUGGGCUAACUGCUUGAUUGGCUGAUCGACUUGCCAACGAGCCGCGACCUGCGGCUGGUGACCCACUUAAUUGUUGGC
..((((.((..(.....)..)).))))(((((((((((((((((.((((....(((((.(((((..........)))))))))).((.....)))))).))))))))))))...))))). (-39.23 = -38.80 +  -0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:02 2006