Locus 8670

Sequence ID X_DroMel_CAF1
Location 21,960,712 – 21,960,831
Length 119
Max. P 0.500000
window14254

overview

Window 4

Location 21,960,712 – 21,960,831
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.39
Mean single sequence MFE -29.26
Consensus MFE -22.38
Energy contribution -21.62
Covariance contribution -0.75
Combinations/Pair 1.33
Mean z-score -1.36
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21960712 119 + 22224390
UUUGGGCAGGGCGCGGAGAAAGGGACGUAGUCGUGGC-AUAGUCGAAGCUGUUGGAAAGUGAAAAGCGAAACGUAGUUUGCCCAAAAGUUGCUAGAUUGUGUGACAAAUGUGGGUACAAA
.(((..(..((((((..........))).)))((.((-((((((..((((.((((...(..((..(((...)))..))..))))).))))....)))))))).))........)..))). ( -30.20)
>DroSec_CAF1 22549 120 + 1
UUUGGGUAGAGCGUGGAGAAAAAGACGUAGUCGCGGCAAUAGUCGAAGCUGUUGGAAAGUGAAAAGCGAAAAUUAGUUUGCCUAAAAGUUGCAAGAUUGUAUGACAAAUGUGGGUACAAA
((((((((((((((..........))))..((((..(((((((....))))))).....(....))))).......))))))))))..........((((((..((....)).)))))). ( -25.20)
>DroEre_CAF1 8138 119 + 1
UUUGGGCACAGCGCGGAGAAAGGGGCGUGGUCGCGGCAAUAGUCGAAGCUGU-GGAAAGUGAAAAGCGCAAAGUAGUUUGCCCGAAAUUUGCCGGAUUGUGUAACAAAUGUGGGUACAAA
.(((..(....((((......(..(((..(((.((((((...(((..(((..-...........)))(((((....))))).)))...)))))))))..)))..)...)))).)..))). ( -32.72)
>DroYak_CAF1 15386 120 + 1
UUUGGGCGGAGCGCGGAGAAAGAGGCGUGGUCGUGGCAAUAGUUGAAGCUAUUGAAAAGUGAAAAGCGCAAAGUAGUUUGGCCAAAAGUUGUCGGAUUGUGUGACAAAUGUGAAGACAAA
....(((.((((.(.......)..((((..((((..(((((((....)))))))....))))...))))......)))).)))....(((.(((.(((........))).))).)))... ( -28.90)
>consensus
UUUGGGCAGAGCGCGGAGAAAGAGACGUAGUCGCGGCAAUAGUCGAAGCUGUUGGAAAGUGAAAAGCGAAAAGUAGUUUGCCCAAAAGUUGCCAGAUUGUGUGACAAAUGUGGGUACAAA
((((((((((.(.(.......).)((((..((((..(((((((....)))))))....))))...)))).......)))))))))).....(((.(((........))).)))....... (-22.38 = -21.62 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:56 2006