Locus 8669

Sequence ID X_DroMel_CAF1
Location 21,955,650 – 21,955,754
Length 104
Max. P 0.849235
window14253

overview

Window 3

Location 21,955,650 – 21,955,754
Length 104
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 96.79
Mean single sequence MFE -32.33
Consensus MFE -30.03
Energy contribution -29.37
Covariance contribution -0.66
Combinations/Pair 1.09
Mean z-score -2.14
Structure conservation index 0.93
SVM decision value 0.78
SVM RNA-class probability 0.849235
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21955650 104 + 22224390
UCUUUUGGCCAAAUGUAUUCAUAAACAUGGCCAGACAACAUCGCAGCCAACAAGCGAGUGAUAGAAGCACGUGCAUCUGUCUGUCUGUCUCUGGCUCCCGACAA
...((((((((..(((........))))))))))).....(((.((((((((..((...((((((.((....)).))))))))..)))...)))))..)))... ( -31.20)
>DroSec_CAF1 13989 104 + 1
UCUUUUGGCCAAAUGUAUUCAUAAACAUGGCCAGACAACAUCGUAGGCAACAAGCGAGUGACAGAAGCACGUGCAUCUGUCUGUCUGUCUCUGGCUCCCGGCAC
.......(((..((((........))))(((((((..(((((((.(....)..))))..((((((.((....)).))))))....))).)))))))...))).. ( -32.90)
>DroSim_CAF1 5682 104 + 1
UCUUUUGGCCAAAUGUAUUCAUAAACAUGGCCAGACAACAUCGUAGGCAACAAGCGAGUGACAGAAGCACGUGCAUCUGUCUGUCUGUCUCUGGCUCCCGGCAC
.......(((..((((........))))(((((((..(((((((.(....)..))))..((((((.((....)).))))))....))).)))))))...))).. ( -32.90)
>consensus
UCUUUUGGCCAAAUGUAUUCAUAAACAUGGCCAGACAACAUCGUAGGCAACAAGCGAGUGACAGAAGCACGUGCAUCUGUCUGUCUGUCUCUGGCUCCCGGCAC
.....((((((..(((........)))))))))((((((.((((.(....)..))))))((((((.((....)).))))))))))((((..........)))). (-30.03 = -29.37 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:55 2006