Locus 8665

Sequence ID X_DroMel_CAF1
Location 21,953,430 – 21,953,550
Length 120
Max. P 0.605852
window14246

overview

Window 6

Location 21,953,430 – 21,953,550
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.83
Mean single sequence MFE -36.60
Consensus MFE -31.77
Energy contribution -33.02
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.87
SVM decision value 0.15
SVM RNA-class probability 0.605852
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21953430 120 - 22224390
UCUCUCGGCUCCAUUCCAUCUAACUUAUGACACUGGAGCGUGUGUUUUUCGGCAACUUCAUUAUCGAUUGCUGAUCCAUGGGAUUAGAUGGACGCAGGAAGACAAUGGUCUGUCUUUCCG
.......((.....(((((((((((((((((((......)))).....(((((((..((......)))))))))..)))))).))))))))).)).((((((((......)))))))).. ( -37.00)
>DroSec_CAF1 11854 120 - 1
UCUCUCGGCUCCAUUCCAUCUAACUUAUGACACUGGCGCGUGUGUUUUUCGGCAACUUCAUUAUCGAUUGCUGAUCCAUGGGAUUAGAUGGACGCAGGAAGACAAUGGUCUGUCUCUCCG
.......((.....(((((((((((((((((((......)))).....(((((((..((......)))))))))..)))))).))))))))).)).((((((((......))))).))). ( -37.00)
>DroSim_CAF1 3529 120 - 1
UCUCUCGGCUCCAUUCCAUCUAACUUAUGACACUGGCGCGUGUGUUUUUCGGCAACUUCAUUAUCGAUUGCUGAUCCAUGGGAUUAGAUGGACGCAGGAAGACAAUGGUCUGUCUCUCCG
.......((.....(((((((((((((((((((......)))).....(((((((..((......)))))))))..)))))).))))))))).)).((((((((......))))).))). ( -37.00)
>DroEre_CAF1 3348 115 - 1
UCUCU-GGCUCCGUUCCAUCUAACUUAUGACACUGGCGCGUGUGUUUUUCGGCAACUUCAUUAUCGAUAGCUGAUCCAUGGGAUUAGAUGGACGCAGCAAGACAAUGGU----CUCUCCG
..(((-.(((.(((.((((((((((((((((((......)))).....(((((....((......))..)))))..)))))).))))))))))).))).)))....((.----....)). ( -35.40)
>consensus
UCUCUCGGCUCCAUUCCAUCUAACUUAUGACACUGGCGCGUGUGUUUUUCGGCAACUUCAUUAUCGAUUGCUGAUCCAUGGGAUUAGAUGGACGCAGGAAGACAAUGGUCUGUCUCUCCG
.......((.....(((((((((((((((((((......)))).....(((((((..((......)))))))))..)))))).))))))))).)).((((((((......))))).))). (-31.77 = -33.02 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:49 2006