Locus 8661

Sequence ID X_DroMel_CAF1
Location 21,949,636 – 21,949,740
Length 104
Max. P 0.910709
window14233

overview

Window 3

Location 21,949,636 – 21,949,740
Length 104
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 91.93
Mean single sequence MFE -29.25
Consensus MFE -26.79
Energy contribution -26.90
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.26
Structure conservation index 0.92
SVM decision value 1.07
SVM RNA-class probability 0.910709
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21949636 104 + 22224390
AUAAUUUCCGAAUCGCUGGGAGCUUUGCUCAAAUGCAUAAGCUCAGGCA-----AGCCAAACCAAACUAAUACAGAUACUUGGCGAAGGGAACUCGAGUCCCGAACCCU
............((((..((((((((((......))).)))))).((..-----..)).....................)..))))((((...(((.....))).)))) ( -27.70)
>DroSim_CAF1 27250 104 + 1
AUAAUUUCCGAAUCGCUGGGAGCUUUGCUCAAAUGCAUAAGCUCAGGCA-----AGCCAAACCAAACUAAAACAGAUACUUGGCGAAGGGAACUCGAGUCCCGAACCCU
............((((..((((((((((......))).)))))).((..-----..)).....................)..))))((((...(((.....))).)))) ( -27.70)
>DroEre_CAF1 81377 109 + 1
AUAAUUUCCGAAUCGCUGGGAGCUUUGCUCAAAUGCAUAAGCUCAGGGAAGCCAAGCCAAAGCAAACUAAACCAAAUACUUGGCGAAGGGAACUCGAGUUCCAACCCCU
.......(((......)))(((((((((......))).))))))((((..((((((......................))))))....(((((....)))))...)))) ( -32.35)
>consensus
AUAAUUUCCGAAUCGCUGGGAGCUUUGCUCAAAUGCAUAAGCUCAGGCA_____AGCCAAACCAAACUAAAACAGAUACUUGGCGAAGGGAACUCGAGUCCCGAACCCU
............((((..((((((((((......))).)))))).(((.......))).....................)..)))).((((.(....)))))....... (-26.79 = -26.90 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:38 2006