Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,938,029 – 21,938,149 |
Length | 120 |
Max. P | 0.539995 |
Location | 21,938,029 – 21,938,149 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.91 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -19.84 |
Energy contribution | -19.73 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.07 |
Structure conservation index | 0.78 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21938029 120 + 22224390 CUUCAAUUUGCAUCGCUUGGUGGAAUUUCCCCAGCUUAAUCUGCUCAGUUCUUUGGCGAGGUAAGUUGUGCAUAAGCUAUGCUCACCUUUCACCCCUCCGGACCACCACUCGUAUUUCAA .............((..((((((.........(((.......)))......(((((.(.((((((.((.(((((...))))).)).)))..))).).)))))))))))..))........ ( -27.00) >DroEre_CAF1 70987 117 + 1 CUUCAAUUUGCAUCGCUUAGUGGAAUUUUCCCAGCUUAAUCUGCUCAGUUCUUUGGCGAGGUAAGUCGUGCAUAAGCUAUGUCCUCUCAUCUCCCCUCUGGACC---UCUUCCACUUCAA ..................(((((((.......(((.......)))..((((...((.(((((.((..(.(((((...))))))..)).))))).))...)))).---..))))))).... ( -24.50) >DroYak_CAF1 75879 97 + 1 CUUCGAUUUGCAUCGCUUAGUGGAAUUUCCACAGCUUAAUCUGCUCGGUUCUCUGGCGAGGUAAGUCGUGCAUAAGCUAUGGU--------------------C---CCUUCUAUUUAGA ...((((....))))((.(((((((...(((.((((((...(((.(((.((((....))))....))).))))))))).))).--------------------.---..))))))).)). ( -25.00) >consensus CUUCAAUUUGCAUCGCUUAGUGGAAUUUCCCCAGCUUAAUCUGCUCAGUUCUUUGGCGAGGUAAGUCGUGCAUAAGCUAUGCUC_C___UC_CCCCUC_GGACC___ACUUCUAUUUCAA ...((((((((.(((((....((((((.....(((.......))).))))))..))))).)))))))).((....))........................................... (-19.84 = -19.73 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:37 2006