Locus 8659

Sequence ID X_DroMel_CAF1
Location 21,937,701 – 21,937,794
Length 93
Max. P 0.996795
window14230 window14231

overview

Window 0

Location 21,937,701 – 21,937,794
Length 93
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 74.50
Mean single sequence MFE -18.23
Consensus MFE -12.73
Energy contribution -12.40
Covariance contribution -0.33
Combinations/Pair 1.17
Mean z-score -2.11
Structure conservation index 0.70
SVM decision value 2.75
SVM RNA-class probability 0.996795
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21937701 93 + 22224390
UGGAAACUAAACUGCUGAUGAAAUGGAUUGUCAUGUGCAUUUCAAUUUCCACCAAUGACAUUCCACACACCCAC--AACUGCUUC--------CACACACAUC
(((((.(.....((.((.((...((((.(((((((((.(........).)))..)))))).))))..))..)))--)...).)))--------))........ ( -15.40)
>DroVir_CAF1 74773 75 + 1
-AGCAACUAAACUGCUGAUGAAAUGGAUUGUCAUGUGCGUUUCAAUUUCCGCCAAUGACAUUCCACACACACAC--AC-------------------------
-((((.......)))).......((((.((((((..(((..........)))..)))))).)))).........--..------------------------- ( -17.50)
>DroEre_CAF1 70165 102 + 1
-GGCAACUAAACUGCUGAUGAAAUGGAUUGUCAUGUGCGUUUCAAUUUCCGCCAAUGACACUCCACACACACACUGAAAGGCAACCAGCCAGACACACACACA
-(....)....((((((......((((.((((((..(((..........)))..)))))).))))..............(....)))).)))........... ( -21.80)
>consensus
_GGCAACUAAACUGCUGAUGAAAUGGAUUGUCAUGUGCGUUUCAAUUUCCGCCAAUGACAUUCCACACACACAC__AA__GC__C________CACACACA__
.((((.......)))).......((((.(((((((((.(........).)))..)))))).))))...................................... (-12.73 = -12.40 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 21,937,701 – 21,937,794
Length 93
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 74.50
Mean single sequence MFE -25.53
Consensus MFE -19.34
Energy contribution -18.90
Covariance contribution -0.44
Combinations/Pair 1.11
Mean z-score -1.54
Structure conservation index 0.76
SVM decision value 1.42
SVM RNA-class probability 0.952662
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21937701 93 - 22224390
GAUGUGUGUG--------GAAGCAGUU--GUGGGUGUGUGGAAUGUCAUUGGUGGAAAUUGAAAUGCACAUGACAAUCCAUUUCAUCAGCAGUUUAGUUUCCA
........((--------(((((..((--((.((((.(((((.((((((..(((.(........).))))))))).)))))..)))).))))....))))))) ( -29.00)
>DroVir_CAF1 74773 75 - 1
-------------------------GU--GUGUGUGUGUGGAAUGUCAUUGGCGGAAAUUGAAACGCACAUGACAAUCCAUUUCAUCAGCAGUUUAGUUGCU-
-------------------------.(--(.(((...(((((.((((((..(((..........)))..)))))).)))))..)))))((((.....)))).- ( -21.60)
>DroEre_CAF1 70165 102 - 1
UGUGUGUGUGUCUGGCUGGUUGCCUUUCAGUGUGUGUGUGGAGUGUCAUUGGCGGAAAUUGAAACGCACAUGACAAUCCAUUUCAUCAGCAGUUUAGUUGCC-
........((.((((((((.......)))))(((...(((((.((((((..(((..........)))..)))))).)))))..))))))))...........- ( -26.00)
>consensus
__UGUGUGUG________G__GC__UU__GUGUGUGUGUGGAAUGUCAUUGGCGGAAAUUGAAACGCACAUGACAAUCCAUUUCAUCAGCAGUUUAGUUGCC_
.............................((..(((.(((((.((((((..(((..........)))..)))))).)))))..)))..))............. (-19.34 = -18.90 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:36 2006