| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,880,735 – 21,880,838 |
| Length | 103 |
| Max. P | 0.982608 |
| Location | 21,880,735 – 21,880,838 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 73.93 |
| Mean single sequence MFE | -21.73 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.23 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21880735 103 + 22224390 GGCCCAUGUAGCAUUGAACUUGAGCUCA-AGUUCGAUUUCAAGCCCUCAUUUACUCAUUUAUUACAUAAACUGUUAUGAAUUCUUGCCUAUGGCCUUCAAUAAA ((((...((((.((((((((((....))-))))))))..((((...((((..((...(((((...)))))..)).))))...)))).))))))))......... ( -22.90) >DroSec_CAF1 72787 95 + 1 CGGCCAUGUAGCAUUGAACUUGAGCUCA-AGUUCGAUUUCAAACCCUCA--------UUUAUUACAGAAAUUGUUUUGAAUUCUUGCCUAUGGCCUUCAAUGAA .(((((((..((((((((((((....))-)))))))............(--------((((..((((...))))..)))))...))).)))))))......... ( -25.90) >DroEre_CAF1 42744 94 + 1 AGAUUAUUUAGCAUUGAAACU-AGCUAAUAGUUAGAUUCCAAGGCCUCC--------UUUGUGACUUAGUAUGUUUUGAACUCUUGCCUGUGGUCUUCG-UGGA (((((((...((((..((((.-.((((..(((((.(....((((...))--------))).)))))))))..))))..).....)))..)))))))...-.... ( -16.40) >consensus AGACCAUGUAGCAUUGAACUUGAGCUCA_AGUUCGAUUUCAAGCCCUCA________UUUAUUACAUAAAAUGUUUUGAAUUCUUGCCUAUGGCCUUCAAUGAA .((((((...((((((((.((((((.....)))))).)))))...............((((..((.......))..))))....)))..))))))......... (-15.00 = -15.23 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:33 2006