Locus 8656

Sequence ID X_DroMel_CAF1
Location 21,876,362 – 21,876,474
Length 112
Max. P 0.816358
window14227

overview

Window 7

Location 21,876,362 – 21,876,474
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 83.18
Mean single sequence MFE -26.38
Consensus MFE -17.60
Energy contribution -18.60
Covariance contribution 1.00
Combinations/Pair 1.17
Mean z-score -2.02
Structure conservation index 0.67
SVM decision value 0.67
SVM RNA-class probability 0.816358
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21876362 112 - 22224390
UUCGAGCGCACUGAAGUGCAAGAAUUUUGGGAAUUUAUGCCUUUUUCUUUUAAGAUUAUUGCCCAUAAUUUUAGGGGAAAACAGCCAAUGUACAUGUUUUCCAUUCGCAUUA
.....((((((....))))..((((....((((..((((....((((((((((((((((.....))))))))))))))))(((.....))).))))..)))))))))).... ( -28.90)
>DroSec_CAF1 67069 112 - 1
UUCAAGCGCACUGAAGUGCAAGAAUGUUUGGAAUUUAUGCAUAUUUCUUCUAAGGUUAUUGCCCAUAAUUUUAGGGGAAAACAGCCAAUGCAAAUGUUUUCCAUUUGCAUUA
(((((((((((....))))......)))))))......((...((((((((((((((((.....))))))))))))))))...)).((((((((((.....)))))))))). ( -33.50)
>DroEre_CAF1 39091 112 - 1
UUCGUGCUCACUGAAGUGCAUGUGUGCUGCGAAUCUAUGCCCCUUUCUUCCUGGAUUAUUACCCAUAAUUUUAUGGGAAAACAGCAAACCAAAAUGUUAUCCAUUCGCAUUA
..(((((.(......).))))).....(((((((...(((.((.........)).......((((((....))))))......)))(((......)))....)))))))... ( -22.40)
>DroYak_CAF1 42583 111 - 1
UUCAAGCUCACUGAAGUGCAAGAAUGCUAAGAGUUUAUGCUCCU-UCUUUUUAGAUUAUUACCCAUAAUUUUAUGGGAAAACAGCAAACGAAAAUGUUUUCCACUCGCAUUA
..............(((((.((..((((..((((....))))..-................((((((....)))))).....))))...((((....))))..)).))))). ( -20.70)
>consensus
UUCAAGCGCACUGAAGUGCAAGAAUGCUGGGAAUUUAUGCCCCUUUCUUCUAAGAUUAUUACCCAUAAUUUUAGGGGAAAACAGCAAACGAAAAUGUUUUCCAUUCGCAUUA
.....((((((....))))...........((((..............(((((((((((.....)))))))))))((((((((...........)))))))))))))).... (-17.60 = -18.60 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:32 2006