Locus 8655

Sequence ID X_DroMel_CAF1
Location 21,873,647 – 21,873,759
Length 112
Max. P 0.943342
window14226

overview

Window 6

Location 21,873,647 – 21,873,759
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 96.43
Mean single sequence MFE -29.10
Consensus MFE -27.86
Energy contribution -27.67
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.96
SVM decision value 1.33
SVM RNA-class probability 0.943342
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21873647 112 - 22224390
CUGUCAUUUGCCAAGGCGCCGACCAGGCGCAUUUUAUGUAAAAAGCUAAAAAAUAUAAUAAUAAGACUUGAAGUGGCGAGUGGUUUGCUAGCAGCAACAUGCAAAUACUCUA
..(((((((..(((((((((.....))))).(((((.((.....)))))))...............)))))))))))(((((.(((((............)))))))))).. ( -30.20)
>DroSec_CAF1 64629 112 - 1
CUGUCAUUUGCCAAGGCGCCGCCCAGGCGCAUUUUAUGUAAAAAGCUAAAAAAUAUAAUAAUAAGACUUGACGUGGCGAAUGGUUUGCUAGCAGCAACAUGCAAAUACUCUA
....((((((((...(((((.....))))).....((((...(((((................)).))).))))))))))))((((((............))))))...... ( -29.09)
>DroEre_CAF1 36739 112 - 1
CUGUCAUUUGCCAUGGCGCCGACCAGGCGCACUUUAUGUAAAAAGCUAAAAAAUAUAAUAAUAAGACUUGAAGUGGCGAAUGGUUUGCCAGCAGCAACAUGCAAAUACUCUA
...(((((((((((.(((((.....))))).((((......))))...........................))))))))))).......(((......))).......... ( -28.50)
>DroYak_CAF1 40050 112 - 1
CUGUCAUUUGCCAAGGCGCCGACCAGGCGCAUUUUAUGUAAAAAGCUAAAAAAUAUAAUAAUAAGACUCGAAGUGGCGAAUGGUUUGCUAGCAGCCACAUGCAAAUACUCUA
....(((((((((..(((((.....))))).(((((.((.....)))))))......................)))))))))((((((............))))))...... ( -28.60)
>consensus
CUGUCAUUUGCCAAGGCGCCGACCAGGCGCAUUUUAUGUAAAAAGCUAAAAAAUAUAAUAAUAAGACUUGAAGUGGCGAAUGGUUUGCUAGCAGCAACAUGCAAAUACUCUA
....(((((((((..(((((.....)))))...((((((.............))))))...............)))))))))((((((............))))))...... (-27.86 = -27.67 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:31 2006