Locus 8649

Sequence ID X_DroMel_CAF1
Location 21,821,944 – 21,822,041
Length 97
Max. P 0.588083
window14212

overview

Window 2

Location 21,821,944 – 21,822,041
Length 97
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 85.99
Mean single sequence MFE -32.71
Consensus MFE -25.22
Energy contribution -24.91
Covariance contribution -0.31
Combinations/Pair 1.16
Mean z-score -1.49
Structure conservation index 0.77
SVM decision value 0.11
SVM RNA-class probability 0.588083
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21821944 97 - 22224390
CCUUGCCGCAGGAA-AAGGGCGGUUGGAAAAUGGGGCGGCAGU------------GGUAGUAAAGGGGCGUGGCGAAGGUUAAGCCAUUGCCAAGAUGAAUGCCAAGUAC
((..(((((.....-....))))).))...((..((((.((.(------------((((((.....(((.((((....)))).))))))))))...))..))))..)).. ( -31.20)
>DroSim_CAF1 31117 97 - 1
CCUUGCCGCAGGAA-AAGGGUGGUUGGAAAAUGGGGCGGUAGU------------GGUAGUAAAGAGGCGUGGCAGAGGUUAAGCCAUUGCCAAGAUGAAUGCCAAGUAC
((..(((((.....-....))))).))...((..((((((..(------------((((((.....(((.((((....)))).))))))))))..))...))))..)).. ( -25.60)
>DroEre_CAF1 35399 109 - 1
CCUUGCCCCAGGGA-AAGGGCGGUUGGGAAACGGGGCGGCAGUGGCAGUGGCAGUGGCAGUAAGGGGGCGUGGCGGAGGUUAAGCCAUUGCCAAGAUGAAUGCCAAGUAC
((((.((....)).-))))(((.((.(....).)).)((((....((.((((((((((.((......)).((((....)))).))))))))))...))..))))..)).. ( -40.40)
>DroYak_CAF1 34898 98 - 1
CCUUGCCGCAGGGAAAAGGGCGGCUGGGAAAUGGGGCGACAGC------------GGCAGCAAAGGGGCGUGGCGGAGGUUAAGCCAUUGCCAAGAUGAAUGCCAAGUAC
(((.(((((..........))))).))).......((....))------------((((.......((((((((.........)))).))))........))))...... ( -33.66)
>consensus
CCUUGCCGCAGGAA_AAGGGCGGUUGGAAAAUGGGGCGGCAGU____________GGCAGUAAAGGGGCGUGGCGGAGGUUAAGCCAUUGCCAAGAUGAAUGCCAAGUAC
((..(((((..........))))).))............................((((.......((((((((.........)))).))))........))))...... (-25.22 = -24.91 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:20 2006