Locus 8646

Sequence ID X_DroMel_CAF1
Location 21,802,134 – 21,802,237
Length 103
Max. P 0.827184
window14208

overview

Window 8

Location 21,802,134 – 21,802,237
Length 103
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 76.14
Mean single sequence MFE -24.84
Consensus MFE -9.20
Energy contribution -9.52
Covariance contribution 0.32
Combinations/Pair 1.33
Mean z-score -2.01
Structure conservation index 0.37
SVM decision value 0.70
SVM RNA-class probability 0.827184
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21802134 103 - 22224390
AUGAAAGUCCCAUGAAAGUU--CCAGUACAAUCCGACGGCUUUUGAAUGCUCGAAAAAUGUGGCAGUGCAAGGACAUAUUUGCACAAGGGCA-----AAUAAUUGCCUUU
......(((.(((.....((--(.(((((((.((...))...)))..)))).)))..))).))).(((((((......)))))))(((((((-----(....)))))))) ( -24.60)
>DroSec_CAF1 15593 98 - 1
AU----GUCCUAUGAAAGUU--CCAGCACAAU-CGACGACUUUCGAAUGAUCGAAAAAUGUUACAGUGCAAGGACACAUUUGCACAAUGGCA-----AAUAAUUGCCUUU
.(----(((((((....)).--...((((...-.((((..((((((....))))))..))))...)))).))))))............((((-----(....)))))... ( -24.50)
>DroSim_CAF1 15922 98 - 1
AU----GUCCUAUGAAAGUU--CCAGCACAAU-CGACGACUUUCGAAUGCUCGAAAAAUGUUGCAGUGCAAGGACACAUUUGCACAAUGGCA-----AAUAAUUGCCUUU
.(----(((((((....)).--...((((...-(((((..((((((....))))))..)))))..)))).))))))............((((-----(....)))))... ( -27.20)
>DroEre_CAF1 18931 88 - 1
---------------------UCCAGUGCAAU-CGCCUGCCUUCGAAAGCCUGAGAAAUCUGGCAGUGCAAGGACAUAUUUCCACCAGGACAAGGUAAAUAAUUGCCUUU
---------------------(((........-.(((((((..(....)...((....)).))))).))..(((......)))....))).(((((((....))))))). ( -24.30)
>DroYak_CAF1 15293 100 - 1
AU----GUUCUGUGAAAGUUCUAAAGUACAAA-CGUCAGCUUCGAAAUGCUCGAAAAAUCUGGCAGUGCAAGGACAUAUUUGCACAAGGACA-----AAUAAUUGCCUUU
.(----(((((.....................-.(((((.(((((.....)))))....))))).(((((((......))))))).))))))-----............. ( -23.60)
>consensus
AU____GUCCUAUGAAAGUU__CCAGUACAAU_CGACGGCUUUCGAAUGCUCGAAAAAUGUGGCAGUGCAAGGACAUAUUUGCACAAGGGCA_____AAUAAUUGCCUUU
.........................((.............((((((....)))))).........(((((((......)))))))....))................... ( -9.20 =  -9.52 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:16 2006