Locus 8645

Sequence ID X_DroMel_CAF1
Location 21,786,636 – 21,786,755
Length 119
Max. P 0.500000
window14207

overview

Window 7

Location 21,786,636 – 21,786,755
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.92
Mean single sequence MFE -37.17
Consensus MFE -27.39
Energy contribution -26.82
Covariance contribution -0.56
Combinations/Pair 1.22
Mean z-score -1.50
Structure conservation index 0.74
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21786636 119 + 22224390
UCGGAGCUUUGGGCAUCAUCCCGGUCAU-CUGCAAACUUUUGGGCAAACCAUAAUUUCGCACGGAGAAAAAGUUUUCGCGUUUCAAGUGGUGGACAAAUAUUUUAAUUGAAACGCUGCGA
.((((...(((((......)))))...)-)))........(((.....))).....(((((..(((((....)))))(((((((((..((((......))))....)))))))))))))) ( -30.50)
>DroSec_CAF1 72432 118 + 1
UCGGAGCUUUGGGCAUCCUCCCGGCCAA-CUGCAAACUU-UGGGCGAACCAUAAUUUCGCCCAGAGAAAAAGUUUUCGAGUUUCGAGUGGUGGACAAAUAUUUUAAUUGAAGCGCUGCGA
(((.(((.(((((......)))))(((.-(..(...(((-((((((((.......))))))))))).........(((.....))))..))))....................))).))) ( -37.80)
>DroSim_CAF1 51700 118 + 1
UCGGAGCUUUGGGCAUCCUCCCGGCCAA-CUGCAAACUU-UGGGCGAACCAUAAUUUCGCCCGGAGAAAAAGUUUUCGAGUUUCGAGUGGUGGACAAAUAUUUUAAUUGAAGCGCUGCGA
(((.(((.(((((......)))))(((.-(..(...(((-((((((((.......))))))))))).........(((.....))))..))))....................))).))) ( -37.00)
>DroYak_CAF1 58427 118 + 1
UCGUAGCUUAGGGCGUCCUCCCGGUCGCCCUGCAAACUU-UGGGCUGGCCAUAAUUUCGUCCGGAGAAAAAGUU-UCGAGUUUCAAGUGGUGGACAAACAUUUUUAUUGGAGCGCUGCGA
(((((((.(((((((.((....)).)))))))....(((-(((((.((........))))))))))........-....(((((((..((((......))))....)))))))))))))) ( -43.40)
>consensus
UCGGAGCUUUGGGCAUCCUCCCGGCCAA_CUGCAAACUU_UGGGCGAACCAUAAUUUCGCCCGGAGAAAAAGUUUUCGAGUUUCAAGUGGUGGACAAAUAUUUUAAUUGAAGCGCUGCGA
(((.(((...(((......)))........((.((((((.((((((((.......))))))))......)))))).)).(((((((..((((......))))....)))))))))).))) (-27.39 = -26.82 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:15 2006