Locus 8642

Sequence ID X_DroMel_CAF1
Location 21,781,359 – 21,781,477
Length 118
Max. P 0.702206
window14202

overview

Window 2

Location 21,781,359 – 21,781,477
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.12
Mean single sequence MFE -25.27
Consensus MFE -16.56
Energy contribution -18.25
Covariance contribution 1.69
Combinations/Pair 1.12
Mean z-score -1.83
Structure conservation index 0.66
SVM decision value 0.35
SVM RNA-class probability 0.702206
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21781359 118 + 22224390
UGCGUUUUCCCUUAACAAACCUUAAGUUGAAGACCCAAUUUAAUUGCUACGUAAAUUGCGCAGCUGCUGCGAAGUUGCAAAUAUACAUACAUAUGUAUGUAUGUAAGUUGGCGCACUU--
(((((((((.(((((......)))))..))))))(((((((.........((((....(((((...)))))...))))..((((((((((....))))))))))))))))).)))...-- ( -34.80)
>DroSim_CAF1 47456 100 + 1
UGCGUUUUCCCUUAACAACGCUUAAGUUGAAGACCGAAUUUAAUUGCUACGUAAAUUGCGCAGCUGCUGCGAUGUUGCAAAUAU--------------------AAGUUGCCGCACUUUC
(((((((((.(((((......)))))..))))))..((((((.((((.((((......(((((...))))))))).))))...)--------------------)))))...)))..... ( -20.50)
>DroEre_CAF1 50440 100 + 1
UGCACUUUCCCUUAACAAACCUUAAGUUGAAAACCCAAUUUAAUUGCUACGCAAAUUGCGCAGCUGCUGCAAAGUGGCAAAUAU--------------------AAGUUGCCGCACUUUC
((((.................((((((((......))))))))..(((.(((.....))).)))...))))..(((((((....--------------------...)))))))...... ( -25.30)
>DroYak_CAF1 53582 100 + 1
UGCAUUUUGCCUUAAGAAACCUUGAGUUGAAAACCCAAUUUAAUUGCUACGUAAAUUGCGCAGCUGCUGCAAAGUGACAAAUGU--------------------AAGUUGCCGCACUUUC
(((.((((..((((((....))))))..))))...(((((((.(((.(((.....((((((....)).)))).))).)))...)--------------------))))))..)))..... ( -20.50)
>consensus
UGCAUUUUCCCUUAACAAACCUUAAGUUGAAAACCCAAUUUAAUUGCUACGUAAAUUGCGCAGCUGCUGCAAAGUGGCAAAUAU____________________AAGUUGCCGCACUUUC
((((.................((((((((......))))))))..(((.(((.....))).)))...))))..(((((((...((((((((......))))))))..)))))))...... (-16.56 = -18.25 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:11 2006