Locus 8638

Sequence ID X_DroMel_CAF1
Location 21,733,987 – 21,734,103
Length 116
Max. P 0.883692
window14197

overview

Window 7

Location 21,733,987 – 21,734,103
Length 116
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 78.21
Mean single sequence MFE -41.08
Consensus MFE -19.97
Energy contribution -21.47
Covariance contribution 1.50
Combinations/Pair 1.04
Mean z-score -2.42
Structure conservation index 0.49
SVM decision value 0.93
SVM RNA-class probability 0.883692
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21733987 116 + 22224390
GUGUCACUUCCUCGGUGACCACUGUGACAUCAUCGCAACGCCGCCAGCAGCUGCAACAGGUGCAACAGCAAUCUGCUCUGCAAGCGGCCCUCGAGCAGCAUCACAUCUCACCAACA
.............(((((....(((((.....(((....(((((..((((..(((.....(((....)))...))).))))..)))))...)))......)))))..))))).... ( -35.80)
>DroPse_CAF1 41603 102 + 1
-----------CCCGUGAUGACGGUGACGUCAUCGCAGAGACGCCAACAGCUGCAACAGGUGCA---GCAGUCGGCGCUCCAAGCGGCCCUCGAGCAGCACCACAUCUCACCCACA
-----------...(((((((((....))))))))).((((((((.((.((((((.....))))---)).)).))))......((.((......)).))......))))....... ( -44.50)
>DroEre_CAF1 24834 116 + 1
GUGUCACCUCCUCGGUGACCACUGUGACAUCAUCGCAGCGCCGCCAGCAGCUGCAACAGGUGCAACAGCAAUCUGCUUUGCAGGCGGCCCUCGAGCAGCAUCACAUCUCACCAGCA
((((((((.....))))).)))(((((.....(((.((.((((((.(((.(((...))).)))....((((......)))).)))))).)))))......)))))........... ( -44.30)
>DroYak_CAF1 25435 116 + 1
GUGUCACCUCCUCGGUGACCACUGUGAAAUCAUCGCAGCGUCGCCAGCAGCUGCAACAGGUGCAACAGCAAUCUGCUUUGCAGGCGGCCCUCGAGCAGCAUCACAUCUCACCAGCA
((((((((.....))))).)))(((((.....(((.((.((((((.(((.(((...))).)))....((((......)))).)))))).)))))......)))))........... ( -41.60)
>DroAna_CAF1 19792 96 + 1
-----------GCGGUGACCACGGUGACGUCAUCGCAGCGGAGACAG------CAACAGGUGCA---GCAGUCGGCCCUGCAGGCUGCGCUGGAGCAGCACCACAUCUCCCCGGCC
-----------((((((((...(....))))))))).(.(((((...------.....(((((.---((((((.((...)).))))))((....)).)))))...))))).).... ( -40.10)
>DroPer_CAF1 42849 102 + 1
-----------CCCGUGACGACGGUGACGUCAUCGCAGAGACGCCAACAGCUGCAACAGGUGCA---GCAGUCGGCGCUCCAAGCGGCCCUCGAGCAGCACCAUAUCUCACCCACA
-----------...((((.((((....)))).)))).((((((((.((.((((((.....))))---)).)).))))......((.((......)).))......))))....... ( -40.20)
>consensus
___________UCGGUGACCACGGUGACAUCAUCGCAGCGACGCCAGCAGCUGCAACAGGUGCA___GCAAUCGGCUCUGCAAGCGGCCCUCGAGCAGCACCACAUCUCACCAACA
.............(((((.....((((.....)))).............(((((...(((.((....((((......)))).....)))))...)))))........))))).... (-19.97 = -21.47 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:06 2006