| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,733,423 – 21,733,541 |
| Length | 118 |
| Max. P | 0.964047 |
| Location | 21,733,423 – 21,733,519 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 94.38 |
| Mean single sequence MFE | -31.99 |
| Consensus MFE | -30.44 |
| Energy contribution | -30.28 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.964047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21733423 96 + 22224390 AGCUGUGCGGAUUGCGAAGCGGAUAGUAAAGCAGACGGCGUACGAAACGUGGGCGCAUUAGGAAAGCGCUGCUUGUUGGCCGUAGGAGCAGCAGGG .(((((((.....))...((((......(((((..(.((((.....)))).)((((.........))))))))).....))))....))))).... ( -30.20) >DroSec_CAF1 24973 96 + 1 AGCUGUGCGGAUUGCGAAGCGGAUAGUAAAGCAGACGGCGUUCGAAACGAGGGCGCAUUAGGAAAGCGCUGCUUGUUGGUCGUGAGGGCAGCACGG ..((((((...((((...((.....))...))))...((.((((.(((((((((((.........))))).)))))).....)))).)).)))))) ( -32.20) >DroSim_CAF1 24756 96 + 1 AGCUGUGCGGAUUGCGAAGCGGAUAGUAAAGCAGACGGCGUUCGAAACGAGGGCGCAUUAGGAAAGCGCUGCUUGUUGGUCGUGAGGGCAGCACGG ..((((((...((((...((.....))...))))...((.((((.(((((((((((.........))))).)))))).....)))).)).)))))) ( -32.20) >DroEre_CAF1 24230 96 + 1 AGCUGUGCGGAUUGCGAAGUGGAUAGUAAAGCAGGCGGCGUACGAAACGAGGGCGCAUUAGGAAAGCGCUGCUUGGUGGCCGUAAGGGCAGCACGA .(((((.(...((((...............))))(((((.(((....(((((((((.........))))).))))))))))))..).))))).... ( -31.26) >DroYak_CAF1 24860 96 + 1 AGCUGUGCGGAUUGCGAAGCGGAUAGUAAAGCAGACGGCGUACGAAACGAGGGCGCAUUAAGAAAGCGCUGCUUGUUGGCCGUAAGGGCAGCACGG .(((((.(...((((...((.....))...))))(((((......(((((((((((.........))))).)))))).)))))..).))))).... ( -34.10) >consensus AGCUGUGCGGAUUGCGAAGCGGAUAGUAAAGCAGACGGCGUACGAAACGAGGGCGCAUUAGGAAAGCGCUGCUUGUUGGCCGUAAGGGCAGCACGG .(((((.(...((((...((.....))...))))(((((......(((((((((((.........))))).)))))).)))))..).))))).... (-30.44 = -30.28 + -0.16)
| Location | 21,733,441 – 21,733,541 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 93.80 |
| Mean single sequence MFE | -29.94 |
| Consensus MFE | -25.26 |
| Energy contribution | -25.30 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21733441 100 + 22224390 GCGGAUAGUAAAGCAGACGGCGUACGAAACGUGGGCGCAUUAGGAAAGCGCUGCUUGUUGGCCGUAGGAGCAGCAGGGAAACCAGAGAAAUCCGGAGAGG .(((((......((..(((((.((((...))))(((((.........)))))........)))))....))....((....))......)))))...... ( -30.10) >DroSec_CAF1 24991 100 + 1 GCGGAUAGUAAAGCAGACGGCGUUCGAAACGAGGGCGCAUUAGGAAAGCGCUGCUUGUUGGUCGUGAGGGCAGCACGGAAACCAGAGAAAUCCGGAGAAG .(((((.((.((((((.((((((((.......))))))..........))))))))((((.((....)).))))))(....).......)))))...... ( -31.30) >DroSim_CAF1 24774 100 + 1 GCGGAUAGUAAAGCAGACGGCGUUCGAAACGAGGGCGCAUUAGGAAAGCGCUGCUUGUUGGUCGUGAGGGCAGCACGGAAACCAGAGAAAUCCGGAGAAG .(((((.((.((((((.((((((((.......))))))..........))))))))((((.((....)).))))))(....).......)))))...... ( -31.30) >DroEre_CAF1 24248 100 + 1 GUGGAUAGUAAAGCAGGCGGCGUACGAAACGAGGGCGCAUUAGGAAAGCGCUGCUUGGUGGCCGUAAGGGCAGCACGAAAACCAGAGAAACCCGGAGAAG .(((......((((((((.(((..(.......)..))).........)).))))))(.((.((....)).)).).......)))................ ( -26.40) >DroYak_CAF1 24878 100 + 1 GCGGAUAGUAAAGCAGACGGCGUACGAAACGAGGGCGCAUUAAGAAAGCGCUGCUUGUUGGCCGUAAGGGCAGCACGGAAACCAGAGAAAUCCGGAGAAG .(((((.((.((((((.(((((..(.......)..)))..........))))))))((((.((....)).))))))(....).......)))))...... ( -30.60) >consensus GCGGAUAGUAAAGCAGACGGCGUACGAAACGAGGGCGCAUUAGGAAAGCGCUGCUUGUUGGCCGUAAGGGCAGCACGGAAACCAGAGAAAUCCGGAGAAG .(((((......((..(((((......(((((((((((.........))))).)))))).)))))....)).....(....).......)))))...... (-25.26 = -25.30 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:05 2006