Locus 8636

Sequence ID X_DroMel_CAF1
Location 21,733,314 – 21,733,412
Length 98
Max. P 0.816934
window14194

overview

Window 4

Location 21,733,314 – 21,733,412
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.82
Mean single sequence MFE -15.18
Consensus MFE -12.72
Energy contribution -12.88
Covariance contribution 0.16
Combinations/Pair 1.17
Mean z-score -1.57
Structure conservation index 0.84
SVM decision value 0.67
SVM RNA-class probability 0.816934
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21733314 98 - 22224390
UAUCACUAUUAUUUACACAUUCACAAUAAAGUUU-UUUUAGAGCUGCAAAAAAAUCGAUGUUACCAUCGAUUACAUCGAUAGUUUCAGUUUUCCGAAAA
...............................(((-((..(((((((.(((...((((((((...........))))))))..))))))))))..))))) ( -16.10)
>DroSec_CAF1 24865 97 - 1
UAUCACUAUUAUUUACACAUUAACAAUAAAAUUU-UUUUAGAGCUGCAAAAAAAUCGAUGUUACCAUCGAUUACAUCGAUAGUUUCAGUUAUCCGAAA-
..................................-......(((((.(((...((((((((...........))))))))..))))))))........- ( -13.60)
>DroSim_CAF1 24647 98 - 1
UAUCACUAUUAUUUACACAUUAACAAUAAAAUUU-UUUUAGAGCUGCAAAAAAAUCGAUGUUACCAUCGAUUACAUCGAUAGUUUCAGUUAUCCGAACA
..................................-......(((((.(((...((((((((...........))))))))..))))))))......... ( -13.60)
>DroEre_CAF1 24122 97 - 1
UAUCACUAUUAUUUACACAUUAACAAUAAAGUUU--UUUAGAGCUGCAAAAAAAUCGAUGUUACCAUCGAUUACAUCGAUAGUUUCCGUUUUCCGAAAA
....((((((...................(((((--....))))).......((((((((....)))))))).....))))))................ ( -14.10)
>DroYak_CAF1 24750 99 - 1
UAUCACUAUUAUUUACACAUUAACAAUAAAGUUUUUUUUAGAGCUGCAAAAAAAUCGAUGUUACCAUCGAUUACAUCGAUAGUUUUGGCUUUCUGAAAA
..................................(((((((((..((((((..((((((((...........))))))))..)))).)).))))))))) ( -18.50)
>consensus
UAUCACUAUUAUUUACACAUUAACAAUAAAGUUU_UUUUAGAGCUGCAAAAAAAUCGAUGUUACCAUCGAUUACAUCGAUAGUUUCAGUUUUCCGAAAA
.......................................(((((((.(((...((((((((...........))))))))..))))))))))....... (-12.72 = -12.88 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:03 2006