Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,716,240 – 21,716,339 |
Length | 99 |
Max. P | 0.981341 |
Location | 21,716,240 – 21,716,339 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 77.33 |
Mean single sequence MFE | -25.82 |
Consensus MFE | -11.77 |
Energy contribution | -12.53 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.16 |
Mean z-score | -3.37 |
Structure conservation index | 0.46 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981341 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21716240 99 - 22224390 AGCAGAAAAGAUAUCCAUGAAUACGAUAUCGCAUAUCGGCUGAUUAAGAAGGAGCUUAUAGUAUAUGUACAUAUU---GUACAUUUUUUGUCUGUCCAAAUA (((.((...((((((.........)))))).....)).))).........(((.(..((((...((((((.....---))))))...))))..))))..... ( -18.80) >DroSec_CAF1 11613 96 - 1 AGCAGGAUAGAUAUCCACGAAUGCA--UUCGCAUAUCGGCUGAUUAA---GGAGCCUAUA-UGUAAGUACAUACUUACAUAUAUGUAUUGUCUGUCCAAAUA ....(((((((((...((((((((.--...)))).))((((......---..))))((((-(((((((....))))))))))).))..)))))))))..... ( -32.90) >DroSim_CAF1 10808 96 - 1 AGCAGGAUAGAUAUCCACGAAUGCA--UUCGCAUAUCGGCUGAUUAA---GGAGCCUAUA-UGUAAGUAAAUACUUACAUAUAUGUAUUGUCUGUCCAAAUA ....(((((((((...((((((((.--...)))).))((((......---..))))((((-(((((((....))))))))))).))..)))))))))..... ( -32.90) >DroEre_CAF1 9669 82 - 1 AGCAGAAUAGAUAUCCAUGAAUGCA--UGCGCAAAUUGGCGGAUUAA---GGUGACUACA-UAUA--------------UGCAUAUAUUGUCUGUCCAAAUA .(((((...(((((......(((((--(((((......))).....(---(....))...-..))--------------)))))))))).)))))....... ( -18.70) >consensus AGCAGAAUAGAUAUCCACGAAUGCA__UUCGCAUAUCGGCUGAUUAA___GGAGCCUAUA_UAUAAGUACAUACU___AUACAUGUAUUGUCUGUCCAAAUA ....(((((((((.....((((((......)))).))((((...........))))................................)))))))))..... (-11.77 = -12.53 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:01 2006