Locus 8633

Sequence ID X_DroMel_CAF1
Location 21,705,752 – 21,705,844
Length 92
Max. P 0.925348
window14191

overview

Window 1

Location 21,705,752 – 21,705,844
Length 92
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.15
Mean single sequence MFE -25.18
Consensus MFE -20.90
Energy contribution -21.90
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.83
SVM decision value 1.17
SVM RNA-class probability 0.925348
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21705752 92 - 22224390
UUGGUUAGUAAAUGGUCGAUUAGAAGACAUUGUUGCUGUAUUAUCAAACAAAGCUGCUGCUGCUCCAGUUG---UAGUAGUGGUUGAUGGUGUAA
.....((((((...(((........)))....))))))(((((((((.(...((((((((.((....)).)---))))))).))))))))))... ( -26.90)
>DroSec_CAF1 1343 95 - 1
UUGGUUAGUAAAUGGUCGAUUAGAAGACAUUGUUGCUGUAUUAUCAAACAAAGCUGCUGCUGCUGCAGUUGUUGUAGUGGUGGUUGAUGGUGUAA
.....((((((...(((........)))....))))))((((((((......((..(..((((.((....)).))))..)..))))))))))... ( -26.70)
>DroSim_CAF1 1068 95 - 1
UUGGUUAGUAAAUGGUCGAUUAGAAGACAUUGUUGCUGUAUUAUCAAACAAAGCUGCUGCUGCUCCAGUUGUUGUAGUGGUGGUUGAUGGUGUAA
.....((((((...(((........)))....))))))(((((((((.((..(((((.((.((....)).)).)))))..)).)))))))))... ( -26.00)
>DroEre_CAF1 1412 95 - 1
UUGGUUAGUAAAUGGUCGAUUAGAAGACAUUGUUGCUGUAUUAUCAAACAAAGCUGCUGCUGCUCCAGUUGCUGUUGUGGUGGUGGAUGGUGUGA
(((((((((((...(((........)))....))))))....)))))(((...(..(..(..(..(((...)))..)..)..)..)....))).. ( -24.30)
>DroYak_CAF1 1226 92 - 1
UUGGUUAGUAAAUGGUCGAUUAGAAGACAUUGUUGCUGUAUUAUCAAACAAAGCUGCUGCUGCUCCAGUU---GUUGUGGUGGUGGAUGGUGUAA
(((((((((((...(((........)))....))))))....)))))(((...(..(..(..(..(....---)..)..)..)..)....))).. ( -22.00)
>consensus
UUGGUUAGUAAAUGGUCGAUUAGAAGACAUUGUUGCUGUAUUAUCAAACAAAGCUGCUGCUGCUCCAGUUG_UGUAGUGGUGGUUGAUGGUGUAA
.....((((((...(((........)))....))))))(((((((((.((..(((((.((((...))))....)))))..)).)))))))))... (-20.90 = -21.90 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:00 2006