Locus 8632

Sequence ID X_DroMel_CAF1
Location 21,705,208 – 21,705,298
Length 90
Max. P 0.529732
window14190

overview

Window 0

Location 21,705,208 – 21,705,298
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 85.89
Mean single sequence MFE -28.40
Consensus MFE -21.38
Energy contribution -23.06
Covariance contribution 1.68
Combinations/Pair 1.19
Mean z-score -1.53
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.529732
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21705208 90 + 22224390
UCGUCAUUGGGCUCUGCAGCUACCAAUACCGCCUGUUUUGUAGGAAGCUUCGAGCCCAUUGAAGAGCAGAUCACGUCCAUUGUGGAGGUA
((.(((.(((((((.(.((((.((.(((..........))).)).)))).)))))))).))).)).......((.(((.....))).)). ( -29.40)
>DroSec_CAF1 793 90 + 1
UCGUCGUUGGGUUCUGCAGCUUCCAAUACCACCUGUUUUGUAGACAGCUUCGAGCCCAUUGAAGAGCAAAUCACGUCCAUAGUGGAGGUA
((.(((.(((((((.(.(((((((((.((.....)).)))..)).)))).)))))))).))).)).......((.(((.....))).)). ( -24.20)
>DroSim_CAF1 520 90 + 1
UCGUCGGUGGGUUCUGCAGCUUCCAAUACCACCUGUUUUGUAGGCAGCUUCGAGCCCAUUGAAGAGCAAAUCACGUCCAUUGUGGAGGUA
((.(((((((((((.((.((((.(((.((.....)).))).)))).))...))))))))))).)).......((.(((.....))).)). ( -31.30)
>DroEre_CAF1 853 90 + 1
UCAACAGUGGGCUCUGCAGUUGCAAAUAGCACAUGUUUUGUGAGCAGCUUCGAGCCCAUUGAAGAGCAGGUCACGCCCAUAAUGGAGGCA
((..((((((((((.(.((((((......((((.....)))).)))))).)))))))))))..)).........((((......).))). ( -33.60)
>DroYak_CAF1 673 90 + 1
UCAUCCGUGGGUUCUGCAGCUUCCAAUAGCGCCUGUUUUGUAAGCAGCUUCGAGCCCAUAAAAGAGCAGGUCACGUCUAUAAUGGAGAUA
((.(((((((((((.((.((((.(((.(((....)))))).)))).))...))))))))...(((...(....).))).....))))).. ( -23.50)
>consensus
UCGUCAGUGGGUUCUGCAGCUUCCAAUACCACCUGUUUUGUAGGCAGCUUCGAGCCCAUUGAAGAGCAGAUCACGUCCAUAGUGGAGGUA
((.(((((((((((.((.((((.(((...........))).)))).))...))))))))))).)).......((.(((.....))).)). (-21.38 = -23.06 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:59 2006