Locus 8630

Sequence ID X_DroMel_CAF1
Location 21,695,445 – 21,695,546
Length 101
Max. P 0.585856
window14186

overview

Window 6

Location 21,695,445 – 21,695,546
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 79.21
Mean single sequence MFE -40.27
Consensus MFE -23.93
Energy contribution -25.05
Covariance contribution 1.12
Combinations/Pair 1.54
Mean z-score -1.60
Structure conservation index 0.59
SVM decision value 0.10
SVM RNA-class probability 0.585856
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21695445 101 + 22224390
AAAAAACUCCAAGCAACCGCGGCGUCCGCUGAAGCUGCGGUGACAGCAAGCGCAUUUUUGGCCGGCUCUGGGUGCGCGGAAAGUGGUGGUUCCCAGGAUCC
.......(((..(.((((((.((.(((((((..((....))..))))..((((((((..((....))..)))))))))))..)).)))))).)..)))... ( -38.10)
>DroSec_CAF1 74 101 + 1
AAAAAACUCCAAGCAGCCACGGCAGCCGCUGGAGCUGCGAUGACAGCAACAGCGGUUUUGCCCGGCUCUGGGUGCGCAGAAAGUGGUGGUUCCCAGGAUCC
.......(((.((.((((..(((((((((((..((((......))))..)))))))..)))).))))))(((..(((........)))...))).)))... ( -41.80)
>DroSim_CAF1 71 101 + 1
AAAAAACUCCAAGCAGCCACGGCAGCCGCUGGAGCUGCGAUGACAGCAACAGCGGUUUUGCCCGGCUCUGGGUGCGCAGAAAGUGGUGGUUCCCAGGAUCC
.......(((.((.((((..(((((((((((..((((......))))..)))))))..)))).))))))(((..(((........)))...))).)))... ( -41.80)
>DroEre_CAF1 322 101 + 1
AAAAAACUCGAAGCAGCCGCGGCGGCCGCUGGAGCUGCCGUGACCGCAGCAGCGGUUUUGCCCGGCUCUGAGUGCGUGGAAAGUGGUGCUUCCAAGGAUCC
.........((((((.((((..(.(((((((((((((.((.((((((....)))))).))..))))))).)))).)).)...))))))))))......... ( -42.90)
>DroYak_CAF1 71 98 + 1
AAAAAACUCGAAGCAGCCGCGGCGGCCGCUGGAGCUGCGGUGACUGCAGCAGCGGUUUUACCCGGAUCUGAUUGUGAGGAAAGUGGU---UUUAAGGAUCC
......((((...((((((.((.(((((((...((((((....).))))))))))))...)))))..)))....)))).........---........... ( -32.90)
>DroAna_CAF1 71 101 + 1
AAAAAGCUCGAAGCCGCUGCUGCUGCCGCUGGAGCAGCCGUAACUGCCGUUACGGCUCUGCCCGGAUCCAAUAUCCCGGAAAGCUUGGGCGCCCACGAGCC
.....(((((..((.((....)).))((((.(((((((((((((....)))))))))....((((..........))))...)))).))))....))))). ( -44.10)
>consensus
AAAAAACUCCAAGCAGCCGCGGCGGCCGCUGGAGCUGCGGUGACAGCAACAGCGGUUUUGCCCGGCUCUGAGUGCGCGGAAAGUGGUGGUUCCCAGGAUCC
.......(((..(.((((((.((((((((((..((((......))))..)))))))).........((((......))))..)).)))))).)..)))... (-23.93 = -25.05 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:56 2006