Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,443,463 – 2,443,615 |
Length | 152 |
Max. P | 0.888542 |
Location | 2,443,463 – 2,443,575 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -35.73 |
Consensus MFE | -29.62 |
Energy contribution | -32.40 |
Covariance contribution | 2.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.00 |
Structure conservation index | 0.83 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2443463 112 + 22224390 CAAGUGCCUGAAGACGUAUACGGGUCACAAGAAUGAGAAGUACUGCAUAUUCGCCAACUUCUCGGUGACGGGAGGAAAGGUGAGUUCAUAUCUUAUGCAC--------AUUUAGGCUUUA .....(((((((..((....)).((((.((((((((...(.....)..(((((((..(((((((....)))))))...))))))))))).)))).)).))--------.))))))).... ( -35.10) >DroSec_CAF1 4374 120 + 1 CAAGUGCCUGAAGACGUAUACGGGUCACAAGAACGAGAAGUACUGCAUAUUCGCCAACUUCUCGGUGACGGGAGGAAAGGUGAGUUCAUAUCUUAUGCACACUAAAACAUUGAGGCUUUA .....((((.(((((........)))............(((..((((((((((((..(((((((....)))))))...))))))).........))))).)))......)).)))).... ( -34.00) >DroSim_CAF1 6527 120 + 1 CAAGUGCCUGAAGACGUAUACGGGUCACAAGAACGAGAAGUACUGCAUAUUCGCCAACUUCUCGGUGACGGGAGGAAAGGUGAGUUCAUAUCUUGUGCACACUAAAACAUUGAGGCUUUG ((((.((((.((..((....)).(((((((((((.....)).......(((((((..(((((((....)))))))...))))))).....))))))).)).........)).)))))))) ( -38.10) >consensus CAAGUGCCUGAAGACGUAUACGGGUCACAAGAACGAGAAGUACUGCAUAUUCGCCAACUUCUCGGUGACGGGAGGAAAGGUGAGUUCAUAUCUUAUGCACACUAAAACAUUGAGGCUUUA .....((((.(((((........))).................((((((((((((..(((((((....)))))))...))))))).........)))))..........)).)))).... (-29.62 = -32.40 + 2.78)
Location | 2,443,503 – 2,443,615 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -41.63 |
Consensus MFE | -35.52 |
Energy contribution | -38.63 |
Covariance contribution | 3.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.68 |
Structure conservation index | 0.85 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2443503 112 + 22224390 UACUGCAUAUUCGCCAACUUCUCGGUGACGGGAGGAAAGGUGAGUUCAUAUCUUAUGCAC--------AUUUAGGCUUUAACUCACAAGCGUCCAUUGUAGUGGAUCGUGAGUGGCAGCG ...((((((((((((..(((((((....)))))))...))))))).........))))).--------......(((...((((((....((((((....)))))).))))))...))). ( -40.70) >DroSec_CAF1 4414 120 + 1 UACUGCAUAUUCGCCAACUUCUCGGUGACGGGAGGAAAGGUGAGUUCAUAUCUUAUGCACACUAAAACAUUGAGGCUUUAACUCACAAGCGUCCAUUGCAGUGGAUCGUGAGUGGCAGCG ....((..(((((((..(((((((....)))))))...)))))))..........(((.((((.......((((.......))))...((((((((....))))).))).))))))))). ( -41.70) >DroSim_CAF1 6567 120 + 1 UACUGCAUAUUCGCCAACUUCUCGGUGACGGGAGGAAAGGUGAGUUCAUAUCUUGUGCACACUAAAACAUUGAGGCUUUGACUCACAAGCGUCGAUUGCAGUGGAUCGUGAGUGGCAGCG ..((((..(((((((..(((((((....)))))))...)))))))((((((((..((((.........(((((.((((........)))).)))))))))..)))).))))...)))).. ( -42.50) >consensus UACUGCAUAUUCGCCAACUUCUCGGUGACGGGAGGAAAGGUGAGUUCAUAUCUUAUGCACACUAAAACAUUGAGGCUUUAACUCACAAGCGUCCAUUGCAGUGGAUCGUGAGUGGCAGCG ...((((((((((((..(((((((....)))))))...))))))).........)))))...............(((...((((((....((((((....)))))).))))))...))). (-35.52 = -38.63 + 3.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:36 2006