| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,691,481 – 21,691,577 |
| Length | 96 |
| Max. P | 0.841252 |
| Location | 21,691,481 – 21,691,577 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 84.69 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -13.89 |
| Energy contribution | -13.95 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21691481 96 - 22224390 AAGAGCC-----GAGAGCAAAAGCUUUUGGCAUUGACAUUGAACAGUCAGCUGUUGGGAAGAAGCAAAGGAAUGAGAAGAAUUUAGUAGGAG---GCGGAGGAA ....(((-----((((((....))))))))).......((.(((((....))))).)).....((.......((((.....)))).......---))....... ( -21.04) >DroSec_CAF1 2775 100 - 1 -AGAGUCCAAAGGAGAGCGAAAGCUUUUGGCAUUGACAUUGAACAGUCAGCUGUUGGGAAGAAGCAUAGAAAUAAGAAAAAUGUAGUAGAUG---GCGGAGCAA -....(((....((((((....))))))(.((((.(((((.(((((....)))))...........((....)).....)))))....))))---.)))).... ( -24.40) >DroSim_CAF1 2893 100 - 1 -AGAGUCCAAAGGAGAGCGAAAGCUUUUGGCAUUGACAUUGAACAGUCAGCUGUUGGGAAGAAGCAUAGAAAUAAGAAAAAUGUAGUAGAAG---GCGGAGCAA -....(((....((((((....)))))).((....((.((.(((((....))))).)).....((((.............)))).)).....---))))).... ( -21.02) >DroEre_CAF1 2219 104 - 1 GAGAUUCUAAAGGAGAGCAAAAGCUUUUGGCAUUGACAUUGAACAGUCAGCUGAUAGGCUGAAGCACAGGAAUGGGAAGAAUGUAGGAGCAGGAGGAGGAGGAA ....((((....((((((....)))))).((.(..(((((......((((((....))))))....((....)).....)))))..).)).))))......... ( -19.60) >consensus _AGAGUCCAAAGGAGAGCAAAAGCUUUUGGCAUUGACAUUGAACAGUCAGCUGUUGGGAAGAAGCAUAGAAAUAAGAAAAAUGUAGUAGAAG___GCGGAGCAA .....((((...((((((....))))))(((..((((........)))))))..)))).............................................. (-13.89 = -13.95 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:55 2006