Locus 8628

Sequence ID X_DroMel_CAF1
Location 21,690,881 – 21,690,979
Length 98
Max. P 0.544811
window14184

overview

Window 4

Location 21,690,881 – 21,690,979
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 73.45
Mean single sequence MFE -19.69
Consensus MFE -10.75
Energy contribution -11.53
Covariance contribution 0.78
Combinations/Pair 1.20
Mean z-score -1.47
Structure conservation index 0.55
SVM decision value 0.02
SVM RNA-class probability 0.544811
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21690881 98 + 22224390
GAGAGAAAA--AAUCGUUAACAAAAAUAUAAGCGCACACUUAUAUUUUUAACACGCGGCAAAGUUGCGUGCGUGGG--GGUGAGAGUGAAAAAUGUAAAAAC
.........--..(((((.(((((((((((((......)))))))))))..(((((((((....))).))))))..--.))...)))))............. ( -20.50)
>DroSec_CAF1 2051 99 + 1
GAGAGAAAAAGAAUCGUUAACAAUAAUAUUAGC-CACACUUUUAUUUUUAACACGCGGCAAAGUCGCGUGCGUGUG--UGUGAGAGUGAAAUAUGUAAAAGC
...............(((((........)))))-..(((((((((.....(((((((((......)).))))))).--.))))))))).............. ( -22.70)
>DroSim_CAF1 2134 99 + 1
GAGAGAAAAAGAAUCGUUAACAAUAAUAUUAGC-CACACUUUUAUUUUUAACACGCGGCAAAGUCGCGUGCGUGUG--UGUGAGAGUGAAAUAUGUAAAAGC
...............(((((........)))))-..(((((((((.....(((((((((......)).))))))).--.))))))))).............. ( -22.70)
>DroEre_CAF1 1398 88 + 1
GGGAGAA--------------GAAAAUAUAAGCGCACCCUCUUAUUUUUAACACACGGCAAAGUUGCGUGCGUGUGUGUGUGCGAGUGAAAAAUGUAAAAAC
.......--------------.....(((..((((((.............((((((((((....)))...)))))))))))))..))).............. ( -18.11)
>DroYak_CAF1 1754 98 + 1
GAGAAAA--AGAAUUGUUAACGAAAAGAAAAGCGCACCCUCUUAUUUUUAACACGCGGCAAAGUUGCGUGCGUAUG--UGUGAGAGUGAAAAAUGUAAAAAC
.......--...........................(.(((((((...((.((((((((...))))))))..))..--.))))))).).............. ( -17.10)
>DroPer_CAF1 10391 79 + 1
GAAGCAA--AAGAUUAUUAAUAAAAAUACAAAA-CACA-------UUUUAACACGCGACAAGUGCGUGUGUGUGU----GUGUGAGAGAGAGA---------
.......--.......................(-((((-------(....(((((((.....)))))))....))----))))..........--------- ( -17.00)
>consensus
GAGAGAA__AGAAUCGUUAACAAAAAUAUAAGC_CACACUUUUAUUUUUAACACGCGGCAAAGUCGCGUGCGUGUG__UGUGAGAGUGAAAAAUGUAAAAAC
..................................(((.(((.........(((((((((......)).)))))))......))).))).............. (-10.75 = -11.53 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:54 2006