| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,688,971 – 21,689,075 |
| Length | 104 |
| Max. P | 0.956047 |
| Location | 21,688,971 – 21,689,075 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.69 |
| Mean single sequence MFE | -34.85 |
| Consensus MFE | -25.23 |
| Energy contribution | -25.27 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21688971 104 + 22224390 GGACAUGGCCUGGAUGCAGAGGAGCCUGCAAACUUGCGCCUCAAGGCGCGAUUGCUUCAACAGGUGGGUUACUUGGUUACUUGUCUAG---GUGUAAAAGGUG---------CCA-A ((.(((.(((((..(((((......)))))...(((((((....))))))).........)))))....(((((((........))))---)))......)))---------)).-. ( -35.00) >DroSec_CAF1 174 101 + 1 GAAAAUGGCCUGGAUGCAGAGGAGCCUGCAAACUUGCGCCUCAAGGCGCGAUUGCUUCAACAGGUGGGU----UGGUGACUCUUCUAG---AUGUAAAAGGUG---------ACAAA .........(((((...((((..(((.((..(((((((((....)))))((.....))...))))..))----.)))..)))))))))---........(...---------.)... ( -32.20) >DroSim_CAF1 174 101 + 1 GGACAUGGCCUGGAUGCAGAGGAGCCUGCAAACUUGCGCCUCAAGGCGCGAUUGCUUCAACAGGUGGGU----UGGUGACUCGUCUAG---AUGUAAAAGGUG---------ACAAA ((((...(((((..(((((......)))))...(((((((....))))))).........)))))((((----(...)))))))))..---........(...---------.)... ( -34.30) >DroEre_CAF1 174 89 + 1 GGACAUGGCCUGGCUGCAGAGGAGCCUGCAAACUUGCGCCUCAAGGCGCGACUGCUCCAACAGGUGGGU--------UGCUCGUCCCC---UUGUAAAAG----------------- ((((...((......)).(((.((((..(....(((((((....)))))))(((......))))..)))--------).)))))))..---.........----------------- ( -35.00) >DroYak_CAF1 174 110 + 1 GGACAUGGCCUGGAUGCAGAGGAGCCUGCAAACUUGCGCCUCAAGGCGCGCCUGCUUCAACAGGUGGGU----AGCUUGCUCGUCCAG---UUGUAAAAGUUGUAAAAGACGACGGA ((((.....(((....)))..((((..((......(((((....)))))(((..((......))..)))----.))..))))))))..---........(((((.....)))))... ( -40.50) >DroAna_CAF1 189 96 + 1 GGCAAUGGCCAGGACGCCAAGGAAACAGCGAAUCUCCGUUUGAAAGCACGGCUAUUGCAACAGGUGGGU----UUUUUCCCCAUGUGGCUUUUGUAACAA----------------- .(((((((((.((((((...(....).)))....)))(((....)))..)))))))))..((.(((((.----......))))).)).............----------------- ( -32.10) >consensus GGACAUGGCCUGGAUGCAGAGGAGCCUGCAAACUUGCGCCUCAAGGCGCGACUGCUUCAACAGGUGGGU____UGGUUACUCGUCUAG___UUGUAAAAGGUG_________ACA_A ((((...(((((..(((((......)))))...(((((((....))))))).........)))))((((.........))))))))............................... (-25.23 = -25.27 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:53 2006