Locus 8625

Sequence ID X_DroMel_CAF1
Location 21,679,286 – 21,679,381
Length 95
Max. P 0.632507
window14180

overview

Window 0

Location 21,679,286 – 21,679,381
Length 95
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 78.09
Mean single sequence MFE -43.18
Consensus MFE -27.40
Energy contribution -25.98
Covariance contribution -1.41
Combinations/Pair 1.42
Mean z-score -1.40
Structure conservation index 0.63
SVM decision value 0.20
SVM RNA-class probability 0.632507
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21679286 95 - 22224390
-----------CCGGAUCCCGCCGGCGAGCUUGUAGCCCUGGCCGUGAAAACGCAGGCUCAGGCGCUCCUGGCAAACAGCGGGAAGCUCCUGCCCAGCCUUGUUAC
-----------..((.....(((((.((((.....(((..(((((((....))).))))..)))))))))))).....(((((.....)))))))........... ( -37.30)
>DroPse_CAF1 3535 104 - 1
CACCAGAUC--UCUGACCCGGCCAGCGAGCUGGUGGCUUUGGCCGUUAAAAGCCAGGCCCAGGCGCUACUGGCCAGCAGUGGCAAGCUGCUGCCUAGCCUUGUCUC
((((((.((--.(((.......))).)).))))))((((.((((...........)))).))))((((..(((.((((((.....)))))))))))))........ ( -43.50)
>DroEre_CAF1 1254 95 - 1
-----------CCGGAUCCCGCAGGCGAGCUUGUGGCCCUGGCCGUGAAAACGCAGGCUCAGGCGCUGCUCGCCAACAGCGGGAAGCUCCUGCCCAGCCUCGUUUC
-----------..((.((((((.(((((((....(((((((((((((....))).))).)))).))))))))))....)))))).((....))))........... ( -44.60)
>DroYak_CAF1 1229 95 - 1
-----------CCGGAUCCCGCCGGCGAGCUUGUGGCCCUGGCCGUGAAAACCCAGGCUCAGGCGUUGCUGGCCAACAGCGGGAAGCUCCUGCCCAGCCUUGUGUC
-----------..((.....(((((((((((((.((((.(((..((....)))))))))))))).)))))))).....(((((.....)))))))........... ( -40.60)
>DroAna_CAF1 1461 106 - 1
CGCCGGACCAGCCGGAUCCGGCUGGCGAGCUAGUCGCUCUGGCAGUGAAGAGCCAAGCCCAGGCCCUGCUCGCCAACAGCGGCAAGCUCUUGCCCAGCCUAGUCUC
.((.((.(((((((....))))))).(((((.((((((.(((((((..((.(((.......))).))))).))))..)))))).)))))....)).))........ ( -49.60)
>DroPer_CAF1 3468 104 - 1
CACCAGAUC--UCUGACCCGGCCAGCGAGCUGGUGGCUUUGGCCGUUAAAAGCCAGGCCCAGGCGCUACUGGCCAGCAGUGGCAAGCUGCUGCCUAGCCUUGUCUC
((((((.((--.(((.......))).)).))))))((((.((((...........)))).))))((((..(((.((((((.....)))))))))))))........ ( -43.50)
>consensus
___________CCGGAUCCCGCCGGCGAGCUUGUGGCCCUGGCCGUGAAAACCCAGGCCCAGGCGCUGCUGGCCAACAGCGGCAAGCUCCUGCCCAGCCUUGUCUC
..............(((...((.((...((..((((((((((((...........))).)))).)))))..)).....(((((.....))))))).))...))).. (-27.40 = -25.98 +  -1.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:51 2006